EPN2-AS1 Gene (RNA Gene)

EPN2 Antisense RNA 1

GC17M019296
GIFtS:
12

Aliases for EPN2-AS1 Gene

Subcategory (RNA class) for EPN2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for EPN2-AS1 Gene

  • EPN2 Antisense RNA 1 2 3 5
  • EPN2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • EPN2-AS1 2 170
  • NONHSAG021101 94

External Ids for EPN2-AS1 Gene

Previous GeneCards Identifiers for EPN2-AS1 Gene

  • GC17M019200

Summaries for EPN2-AS1 Gene

GeneCards Summary for EPN2-AS1 Gene

EPN2-AS1 (EPN2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for EPN2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EPN2-AS1 Gene

Genomics for EPN2-AS1 Gene

GeneHancer (GH) Regulatory Elements for EPN2-AS1 Gene

Promoters and enhancers for EPN2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J019305 Enhancer 1 ENCODE dbSUPER 750.6 +0.1 114 1.6 SMARCE1 RELA L3MBTL2 BCL6B TFE3 MLLT1 SMARCA4 CREM TRIM24 ZNF644 EPN2-AS1 lnc-MAPK7-3 EPN2-IT1 EPN2
GH17J019307 Enhancer 0.2 dbSUPER 750.6 -1.6 -1589 0.6 EPN2-AS1 EPN2 piR-45645 EPN2-IT1
GH17J019329 Enhancer 0.9 Ensembl ENCODE dbSUPER 12.5 -25.3 -25263 3 NFIB RELA ZIC2 ZBTB8A PKNOX1 ZBTB48 FOS NFIC BATF JUND piR-45645 ENSG00000262292 EPN2-AS1 EPN2 B9D1 MAPK7 MFAP4 ENSG00000252349 EPN2-IT1
GH17J019302 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.6 +2.3 2343 2.4 ETV6 ELF1 ELF3 SP1 MAFK IKZF1 ATF1 IKZF2 HDAC1 ATF7 ENSG00000262292 MAPK7 EPN2-AS1 lnc-MAPK7-3 EPN2-IT1 EPN2
GH17J019316 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 0.4 -11.0 -11008 2 FOXA1 NR2F6 ATF1 CREB1 MAX RAD21 SP1 ZSCAN21 EGR1 ZNF644 EPN2 EPN2-AS1 piR-45645 EPN2-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EPN2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EPN2-AS1 Gene

Genomic Locations for EPN2-AS1 Gene
chr17:19,296,596-19,306,261
(GRCh38/hg38)
Size:
9,666 bases
Orientation:
Minus strand
chr17:19,199,909-19,209,574
(GRCh37/hg19)
Size:
9,666 bases
Orientation:
Minus strand

Genomic View for EPN2-AS1 Gene

Genes around EPN2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EPN2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EPN2-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for EPN2-AS1 Gene

Proteins for EPN2-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for EPN2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EPN2-AS1 Gene

Domains & Families for EPN2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EPN2-AS1 Gene

Function for EPN2-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for EPN2-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EPN2-AS1 Gene

Localization for EPN2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EPN2-AS1 Gene

Pathways & Interactions for EPN2-AS1 Gene

PathCards logo

SuperPathways for EPN2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EPN2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EPN2-AS1 Gene

Drugs & Compounds for EPN2-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for EPN2-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for EPN2-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for EPN2-AS1 Gene

No ASD Table

Relevant External Links for EPN2-AS1 Gene

GeneLoc Exon Structure for
EPN2-AS1
ECgene alternative splicing isoforms for
EPN2-AS1

Expression for EPN2-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EPN2-AS1 Gene

mRNA expression in normal human tissues for EPN2-AS1 Gene
mRNA expression by GTEx for EPN2-AS1 Gene

SOURCE GeneReport for Unigene cluster for EPN2-AS1 Gene:

Hs.621672
genes like me logo Genes that share expression patterns with EPN2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EPN2-AS1 Gene

Orthologs for EPN2-AS1 Gene

Evolution for EPN2-AS1 Gene

ENSEMBL:
Gene Tree for EPN2-AS1 (if available)
TreeFam:
Gene Tree for EPN2-AS1 (if available)

No data available for Orthologs for EPN2-AS1 Gene

Paralogs for EPN2-AS1 Gene

No data available for Paralogs for EPN2-AS1 Gene

Variants for EPN2-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for EPN2-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000597019 -- 19,306,696(-) C/A upstream_transcript_variant
rs1000944786 -- 19,308,148(-) A/T upstream_transcript_variant
rs1000945169 -- 19,296,151(-) T/C downstream_transcript_variant
rs1001494797 -- 19,301,606(-) G/A intron_variant
rs1001504273 -- 19,305,510(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for EPN2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3582561 CNV loss 25503493
nsv1061317 CNV gain 25217958
nsv833393 CNV gain+loss 17160897

Additional Variant Information for EPN2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EPN2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EPN2-AS1 Gene

Disorders for EPN2-AS1 Gene

Additional Disease Information for EPN2-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for EPN2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EPN2-AS1 Gene

Publications for EPN2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 56

No data available for External Links for EPN2-AS1 Gene

Products for EPN2-AS1 Gene

Sources for EPN2-AS1 Gene