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Aliases for EP300-AS1 Gene

Subcategory (RNA class) for EP300-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for EP300-AS1 Gene

  • EP300 Antisense RNA 1 2 3 5

External Ids for EP300-AS1 Gene

Summaries for EP300-AS1 Gene

GeneCards Summary for EP300-AS1 Gene

EP300-AS1 (EP300 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EP300-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EP300-AS1 Gene

Genomics for EP300-AS1 Gene

GeneHancer (GH) Regulatory Elements for EP300-AS1 Gene

Promoters and enhancers for EP300-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J041196 Promoter/Enhancer 1.4 Ensembl ENCODE 650.7 -0.1 -133 1.7 ARID4B SIN3A ZNF48 YY1 GLIS2 E2F8 ZNF416 SP3 SP5 NFYC EP300-AS1 ENSG00000235513 RNU6-375P EP300 ST13 XPNPEP3 L3MBTL2
GH22J041197 Enhancer 0.5 ENCODE 650.7 +0.8 849 0.2 ZNF316 MAFF MAFG EMSY MAFK EP300-AS1 RNU6-375P ST13 XPNPEP3 MEI1 LRRC37A14P
GH22J041284 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 33 -90.8 -90820 8.1 FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC SSRP1 ZNF610 RANGAP1 EP300 XRCC6 ENSG00000272834 EP300-AS1 ENSG00000232754 ENSG00000227413 L3MBTL2 NAGA ZC3H7B
GH22J040634 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 35.4 +561.2 561174 4.4 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B ZNF213 MKL1 EP300 XRCC6 PHF5A EP300-AS1 ENSG00000272834 RPL4P6 ENSG00000232754 DNAJB7 TNRC6B
GH22J041945 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 24 -749.4 -749428 2.7 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 E2F8 ZNF143 CENPM EP300 XRCC6 EP300-AS1 WBP2NL SMDT1 ENSG00000232754 NAGA MEI1 POLDIP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EP300-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EP300-AS1 Gene

Genomic Locations for EP300-AS1 Gene
chr22:41,174,591-41,197,501
(GRCh38/hg38)
Size:
22,911 bases
Orientation:
Minus strand

Genomic View for EP300-AS1 Gene

Genes around EP300-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EP300-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EP300-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EP300-AS1 Gene

Proteins for EP300-AS1 Gene

Post-translational modifications for EP300-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EP300-AS1 Gene

Domains & Families for EP300-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EP300-AS1 Gene

Function for EP300-AS1 Gene

Phenotypes From GWAS Catalog for EP300-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EP300-AS1 Gene

Localization for EP300-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EP300-AS1 Gene

Pathways & Interactions for EP300-AS1 Gene

SuperPathways for EP300-AS1 Gene

No Data Available

Interacting Proteins for EP300-AS1 Gene

Gene Ontology (GO) - Biological Process for EP300-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EP300-AS1 Gene

Drugs & Compounds for EP300-AS1 Gene

No Compound Related Data Available

Transcripts for EP300-AS1 Gene

mRNA/cDNA for EP300-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for EP300-AS1 Gene

No ASD Table

Relevant External Links for EP300-AS1 Gene

GeneLoc Exon Structure for
EP300-AS1
ECgene alternative splicing isoforms for
EP300-AS1

Expression for EP300-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EP300-AS1 Gene

genes like me logo Genes that share expression patterns with EP300-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EP300-AS1 Gene

Orthologs for EP300-AS1 Gene

Evolution for EP300-AS1 Gene

ENSEMBL:
Gene Tree for EP300-AS1 (if available)
TreeFam:
Gene Tree for EP300-AS1 (if available)

No data available for Orthologs for EP300-AS1 Gene

Paralogs for EP300-AS1 Gene

No data available for Paralogs for EP300-AS1 Gene

Variants for EP300-AS1 Gene

Sequence variations from dbSNP and Humsavar for EP300-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000433124 -- 41,195,745(-) T/G intron_variant
rs1000827153 -- 41,189,756(-) C/T intron_variant
rs1000839924 -- 41,186,728(-) C/T intron_variant
rs1000941420 -- 41,189,974(-) G/A intron_variant
rs1000981496 -- 41,192,557(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for EP300-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3575480 CNV gain 25503493
nsv1160764 CNV deletion 26073780
nsv524585 CNV loss 19592680
nsv589049 CNV gain 21841781
nsv962797 CNV duplication 23825009

Additional Variant Information for EP300-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EP300-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EP300-AS1 Gene

Disorders for EP300-AS1 Gene

Additional Disease Information for EP300-AS1

No disorders were found for EP300-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EP300-AS1 Gene

Publications for EP300-AS1 Gene

  1. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) Schizophrenia Working Group of the Psychiatric Genomics Consortium (Nature 2014) 3 58

Products for EP300-AS1 Gene

Sources for EP300-AS1 Gene

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