Aliases for ENSG00000283417 Gene

Subcategory (RNA class) for ENSG00000283417 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000283417 Gene

  • Novel Transcript 5
  • HSALNG0115838 169
  • Lnc-CCL1-11 170
  • AC024614.4 5

External Ids for ENSG00000283417 Gene

Summaries for ENSG00000283417 Gene

GeneCards Summary for ENSG00000283417 Gene

ENSG00000283417 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000283417 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000283417 Gene

Genomics for ENSG00000283417 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000283417 Gene

Promoters and enhancers for ENSG00000283417 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J033871 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -56.6 -56640 5.6 SMARCE1 CC2D1A ELF1 L3MBTL2 DACH1 TEAD4 NFIB ZNF148 GTF2F1 MAFK RF00951-052 TLK2P1 CCL13 ENSG00000283417 ENSG00000279668 ASIC2
GH17J033811 Enhancer 0.3 Ensembl 0.6 +4.9 4861 1.4 CEBPB ENSG00000283417 lnc-CCL1-9 ASIC2
GH17J033779 Enhancer 0.6 ENCODE 0.3 +37.5 37494 0.1 CTCF ZNF362 RAD21 ZNF384 DPF2 ARID2 REST PHF21A TRIM22 SMC3 ASIC2 lnc-CCL1-9 ENSG00000283417
GH17J033858 Enhancer 0.5 Ensembl 0.3 -41.6 -41640 0.8 CC2D1A ARID2 REST FOSL1 ZNF592 RAD21 ZBTB33 RF00951-052 ENSG00000283417 ENSG00000279668 ASIC2
GH17J033802 Enhancer 0.3 Ensembl 0.4 +13.3 13260 2.6 NFE2 ENSG00000283417 lnc-CCL1-9 ASIC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000283417 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000283417 Gene

Genomic Locations for ENSG00000283417 Gene
chr17:33,791,838-33,816,761
(GRCh38/hg38)
Size:
24,924 bases
Orientation:
Minus strand

Genomic View for ENSG00000283417 Gene

Genes around ENSG00000283417 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000283417 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000283417 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000283417 Gene

Proteins for ENSG00000283417 Gene

Post-translational modifications for ENSG00000283417 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000283417 Gene

Domains & Families for ENSG00000283417 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000283417 Gene

Function for ENSG00000283417 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000283417 Gene

Localization for ENSG00000283417 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000283417 Gene

Pathways & Interactions for ENSG00000283417 Gene

PathCards logo

SuperPathways for ENSG00000283417 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000283417 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000283417 Gene

Drugs & Compounds for ENSG00000283417 Gene

No Compound Related Data Available

Transcripts for ENSG00000283417 Gene

mRNA/cDNA for ENSG00000283417 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000283417 Gene

No ASD Table

Relevant External Links for ENSG00000283417 Gene

GeneLoc Exon Structure for
ENSG00000283417

Expression for ENSG00000283417 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000283417 Gene

Orthologs for ENSG00000283417 Gene

Evolution for ENSG00000283417 Gene

ENSEMBL:
Gene Tree for ENSG00000283417 (if available)
TreeFam:
Gene Tree for ENSG00000283417 (if available)

No data available for Orthologs for ENSG00000283417 Gene

Paralogs for ENSG00000283417 Gene

No data available for Paralogs for ENSG00000283417 Gene

Variants for ENSG00000283417 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000283417 Gene

Disorders for ENSG00000283417 Gene

No disorders were found for ENSG00000283417 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000283417 Gene

Publications for ENSG00000283417 Gene

No publications were found for ENSG00000283417 Gene.

No data available for External Links for ENSG00000283417 Gene

Products for ENSG00000283417 Gene

Sources for ENSG00000283417 Gene