Aliases for ENSG00000283341 Gene

Subcategory (RNA class) for ENSG00000283341 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000283341 Gene

  • Novel Transcript 5
  • NONHSAG008125.2 91
  • Lnc-HSD17B12-1 165
  • AC068205.2 5

External Ids for ENSG00000283341 Gene

Previous GeneCards Identifiers for ENSG00000283341 Gene

  • GC11P043617
  • GC11P043625
  • GC11P043623
  • GC11P043632
  • GC11P043586
  • GC11P043587
  • GC11P043595
  • GC11P043601
  • GC11P043607
  • GC11P043616

Summaries for ENSG00000283341 Gene

GeneCards Summary for ENSG00000283341 Gene

ENSG00000283341 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000283341 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000283341 Gene

Genomics for ENSG00000283341 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000283341 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J043578 Promoter/Enhancer 1.1 Ensembl ENCODE 600.7 +1.4 1412 3 PRDM10 ZNF629 KDM1A CTCF PRDM1 ZSCAN4 POLR2A PATZ1 ZNF501 EZH2 ENSG00000283341 MIR129-2 HSD17B12 ENSG00000283217 ALKBH3
GH11J043577 Enhancer 0.9 ENCODE 600.7 -1.7 -1713 0.2 CTCF ZNF629 REST TFE3 IKZF1 KDM1A ZNF7 ZNF143 MTA2 PATZ1 ENSG00000283341 HSD17B12 ENSG00000283217 ALKBH3
GH11J043582 Enhancer 0.3 Ensembl 600.7 -0.8 -788 0.2 EZH2 ENSG00000283341 HSD17B12 ENSG00000283217 ALKBH3
GH11J043643 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 0.2 +65.6 65612 2.2 SP1 HNRNPL GATAD2A PRDM10 ZNF629 TFE3 SIX5 SOX13 POLR2A JUND HSD17B12 MIR129-2 ALKBH3 ENSG00000246250 piR-32461-033 ENSG00000283341 ENSG00000283217
GH11J043679 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.1 +102.3 102327 3.2 SP1 CREB1 GATAD2A REST ZNF629 RFX1 KDM1A POLR2A BACH1 FOS HSD17B12 RF00017-900 RPL23AP63 ENSG00000283341 ALKBH3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000283341 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000283341 Gene

Genomic Locations for ENSG00000283341 Gene
chr11:43,578,889-43,840,030
(GRCh38/hg38)
Size:
261,142 bases
Orientation:
Plus strand

Genomic View for ENSG00000283341 Gene

Genes around ENSG00000283341 on UCSC Golden Path with GeneCards custom track
ENSG00000283341 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000283341 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000283341 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000283341 Gene

Proteins for ENSG00000283341 Gene

Post-translational modifications for ENSG00000283341 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000283341 Gene

Domains & Families for ENSG00000283341 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000283341 Gene

Function for ENSG00000283341 Gene

Phenotypes From GWAS Catalog for ENSG00000283341 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000283341 Gene

Localization for ENSG00000283341 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000283341 Gene

Pathways & Interactions for ENSG00000283341 Gene

PathCards logo

SuperPathways for ENSG00000283341 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000283341 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000283341 Gene

Drugs & Compounds for ENSG00000283341 Gene

No Compound Related Data Available

Transcripts for ENSG00000283341 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000283341 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EED224_9606 lncRNA 2814 1

Ensembl: ENST00000664853 (view in UCSC) ,

URS0000EF258C_9606 lncRNA 771 1

Ensembl: ENST00000532864 (view in UCSC) ,

URS0000EF2D0E_9606 lncRNA 748 1

Ensembl: ENST00000529261 (view in UCSC) ,

URS00008B42BE_9606 lncRNA 5210 2

LNCipedia: lnc-HSD17B12-1:14,

NONCODE: NONHSAT018944.2,

URS00008B4845_9606 lncRNA 481 2

LNCipedia: lnc-HSD17B12-1:17,

NONCODE: NONHSAT018946.2,

ENSG00000283341 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ENSG00000283341 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000283341 Gene

No ASD Table

Relevant External Links for ENSG00000283341 Gene

GeneLoc Exon Structure for
ENSG00000283341

Expression for ENSG00000283341 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000283341 Gene

Orthologs for ENSG00000283341 Gene

Evolution for ENSG00000283341 Gene

ENSEMBL:
Gene Tree for ENSG00000283341 (if available)
TreeFam:
Gene Tree for ENSG00000283341 (if available)

No data available for Orthologs for ENSG00000283341 Gene

Paralogs for ENSG00000283341 Gene

No data available for Paralogs for ENSG00000283341 Gene

Variants for ENSG00000283341 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000283341 Gene

Disorders for ENSG00000283341 Gene

No disorders were found for ENSG00000283341 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000283341 Gene

Publications for ENSG00000283341 Gene

No publications were found for ENSG00000283341 Gene.

No data available for Mastermind for ENSG00000283341 Gene

Products for ENSG00000283341 Gene

Sources for ENSG00000283341 Gene