Aliases for ENSG00000281333 Gene

Subcategory (RNA class) for ENSG00000281333 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000281333 Gene

  • Novel Transcript, Antisense To KITLG 5
  • HSALNG0092894 164
  • Lnc-TMTC3-16 165
  • AC024941.2 5

External Ids for ENSG00000281333 Gene

Summaries for ENSG00000281333 Gene

GeneCards Summary for ENSG00000281333 Gene

ENSG00000281333 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000281333 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000281333 Gene

Genomics for ENSG00000281333 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000281333 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J088577 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.2 -2231 6.6 HNRNPL CTCF TEAD4 PRDM10 ZNF629 PRDM1 ZIC2 RBFOX2 POLR2A PATZ1 KITLG ENSG00000281333 HSALNG0092900 TMTC3
GH12J088552 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -26.8 -26831 3.8 ZNF221 CEBPG PRDM10 ZNF629 ZNF692 FOXA1 REST CEBPA ZNF561 SOX13 CEP290 ENSG00000281333 KITLG HSALNG0092900 TMTC3
GH12J088562 Enhancer 0.7 ENCODE dbSUPER 0.4 -17.3 -17317 1.7 CEBPA SOX13 CEBPB MAFK JUND SMARCA4 MAFF POLR2A TMTC3 KITLG ENSG00000281333 HSALNG0092900
GH12J088544 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 -34.3 -34322 3.6 CEBPB CUX1 GATA3 REST PRDM6 FOS NR3C1 ENSG00000281333 KITLG HSALNG0092900 TMTC3
GH12J088566 Enhancer 0.6 ENCODE 0.4 -14.0 -13964 0.8 PRDM10 FOXA1 SOX13 ZBTB44 ZNF580 TEAD1 NFIC GATA3 JUND NFIB TMTC3 KITLG ENSG00000281333 HSALNG0092900
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000281333 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000281333 Gene

Genomic Locations for ENSG00000281333 Gene
chr12:88,580,531-88,600,725
(GRCh38/hg38)
Size:
20,195 bases
Orientation:
Plus strand

Genomic View for ENSG00000281333 Gene

Genes around ENSG00000281333 on UCSC Golden Path with GeneCards custom track
ENSG00000281333 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000281333 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000281333 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000281333 Gene

Proteins for ENSG00000281333 Gene

Post-translational modifications for ENSG00000281333 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000281333 Gene

Domains & Families for ENSG00000281333 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000281333 Gene

Function for ENSG00000281333 Gene

Phenotypes From GWAS Catalog for ENSG00000281333 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000281333 Gene

Localization for ENSG00000281333 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000281333 Gene

Pathways & Interactions for ENSG00000281333 Gene

PathCards logo

SuperPathways for ENSG00000281333 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000281333 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000281333 Gene

Drugs & Compounds for ENSG00000281333 Gene

No Compound Related Data Available

Transcripts for ENSG00000281333 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000281333 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000811D5E_9606 lncRNA 493 3

Ensembl: ENST00000625763 (view in UCSC) ,

LncBook: HSALNT0192524,

LNCipedia: lnc-TMTC3-16:1,

URS0000EF0B93_9606 lncRNA 653 1

Ensembl: ENST00000670029 (view in UCSC) ,

URS0000EBACD3_9606 lncRNA 1501 1

LncBook: HSALNT0192530,

ENSG00000281333 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000281333 Gene

No ASD Table

Relevant External Links for ENSG00000281333 Gene

GeneLoc Exon Structure for
ENSG00000281333

No data available for mRNA/cDNA for ENSG00000281333 Gene

Expression for ENSG00000281333 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000281333 Gene

Orthologs for ENSG00000281333 Gene

Evolution for ENSG00000281333 Gene

ENSEMBL:
Gene Tree for ENSG00000281333 (if available)
TreeFam:
Gene Tree for ENSG00000281333 (if available)

No data available for Orthologs for ENSG00000281333 Gene

Paralogs for ENSG00000281333 Gene

No data available for Paralogs for ENSG00000281333 Gene

Variants for ENSG00000281333 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000281333 Gene

Disorders for ENSG00000281333 Gene

Additional Disease Information for ENSG00000281333

No disorders were found for ENSG00000281333 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000281333 Gene

Publications for ENSG00000281333 Gene

No publications were found for ENSG00000281333 Gene.

No data available for Mastermind for ENSG00000281333 Gene

Products for ENSG00000281333 Gene

Sources for ENSG00000281333 Gene