Aliases for ENSG00000279342 Gene

Subcategory (RNA class) for ENSG00000279342 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000279342 Gene

  • Novel Transcript, Sense Intronic To MSANTD2 5
  • HSALNG0087913 164
  • Lnc-ESAM-65 165
  • AP000866.6 5

External Ids for ENSG00000279342 Gene

Summaries for ENSG00000279342 Gene

GeneCards Summary for ENSG00000279342 Gene

ENSG00000279342 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000279342 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000279342 Gene

Genomics for ENSG00000279342 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000279342 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J124793 Enhancer 0.6 ENCODE 600.7 -1.0 -1042 0.2 CTCF PKNOX1 RAD21 TRIM22 EP300 SCRT2 RUNX3 NR2C2 SMC3 NR2F1 ENSG00000279342 ESAM ENSG00000250073 VSIG2 ENSG00000255045 SIAE SPA17 NRGN ROBO3 LOC100507283
GH11J124798 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 -7.2 -7229 3.7 CREB1 GATAD2A PRDM10 ZNF629 IKZF1 ZNF692 POLR2A BACH1 JUND LARP7 LOC100507283 MSANTD2 ENSG00000254941 ENSG00000279342 ESAM
GH11J124789 Enhancer 0.2 Ensembl 0.7 +2.6 2617 0.8 ENSG00000254509 lnc-NRGN-3 LOC100507283 ESAM ENSG00000250073 VSIG2 ENSG00000255045 NRGN SIAE SPA17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000279342 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000279342 Gene

Genomic Locations for ENSG00000279342 Gene
chr11:124,789,240-124,792,818
(GRCh38/hg38)
Size:
3,579 bases
Orientation:
Minus strand

Genomic View for ENSG00000279342 Gene

Genes around ENSG00000279342 on UCSC Golden Path with GeneCards custom track
ENSG00000279342 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000279342 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000279342 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000279342 Gene

Proteins for ENSG00000279342 Gene

Post-translational modifications for ENSG00000279342 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000279342 Gene

Domains & Families for ENSG00000279342 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000279342 Gene

Function for ENSG00000279342 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000279342 Gene

Localization for ENSG00000279342 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000279342 Gene

Pathways & Interactions for ENSG00000279342 Gene

PathCards logo

SuperPathways for ENSG00000279342 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000279342 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000279342 Gene

Drugs & Compounds for ENSG00000279342 Gene

No Compound Related Data Available

Transcripts for ENSG00000279342 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000279342 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000AA48DC_9606 lncRNA 826 3

Ensembl: ENST00000624557 (view in UCSC) ,

LncBook: HSALNT0182743,

LNCipedia: lnc-ESAM-65:2,

URS0000A82735_9606 lncRNA 3579 2

Ensembl: ENST00000638898 (view in UCSC) ,

LNCipedia: lnc-ESAM-65:1,

ENSG00000279342 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000279342 Gene

No ASD Table

Relevant External Links for ENSG00000279342 Gene

GeneLoc Exon Structure for
ENSG00000279342

No data available for mRNA/cDNA for ENSG00000279342 Gene

Expression for ENSG00000279342 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000279342 Gene

Orthologs for ENSG00000279342 Gene

Evolution for ENSG00000279342 Gene

ENSEMBL:
Gene Tree for ENSG00000279342 (if available)
TreeFam:
Gene Tree for ENSG00000279342 (if available)

No data available for Orthologs for ENSG00000279342 Gene

Paralogs for ENSG00000279342 Gene

No data available for Paralogs for ENSG00000279342 Gene

Variants for ENSG00000279342 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000279342 Gene

Disorders for ENSG00000279342 Gene

Additional Disease Information for ENSG00000279342

No disorders were found for ENSG00000279342 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000279342 Gene

Publications for ENSG00000279342 Gene

No publications were found for ENSG00000279342 Gene.

No data available for Mastermind for ENSG00000279342 Gene

Products for ENSG00000279342 Gene

Sources for ENSG00000279342 Gene