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Aliases for ENSG00000278469 Gene

Subcategory (RNA class) for ENSG00000278469 Gene

SRP

Quality Score for this RNA gene is

13

Aliases for ENSG00000278469 Gene

  • RF00017 5

External Ids for ENSG00000278469 Gene

ORGUL Members for ENSG00000278469 Gene

Summaries for ENSG00000278469 Gene

GeneCards Summary for ENSG00000278469 Gene

ENSG00000278469 is an RNA Gene, and is affiliated with the SRP RNA class.

Additional gene information for ENSG00000278469 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000278469 Gene

Genomics for ENSG00000278469 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000278469 Gene

Promoters and enhancers for ENSG00000278469 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J003122 Enhancer 0.7 ENCODE dbSUPER 600.7 -1.5 -1459 1.8 SCRT2 NR2F2 JUND JUN GLIS1 HNF4A ENSG00000278469 TSPAN9 GC12M003110
GH12J003115 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.4 -6377 5.6 ZNF121 SP1 POLR2A ZBTB33 ZNF341 ZNF140 PKNOX1 FOS HNF4A JUND GC12M003110 TSPAN9 ITFG2 TULP3 PARP11 ENSG00000278469 GC12P003110
GH12J003130 Promoter/Enhancer 1.1 FANTOM5 Ensembl dbSUPER 0.4 +5.5 5541 0.6 USF1 TSPAN9 ENSG00000278469 TSPAN9-IT1
GH12J003129 Enhancer 0.7 ENCODE dbSUPER 0.7 +4.8 4753 0.1 RUNX3 POLR2A MYC MAX ENSG00000278469 TSPAN9-IT1 TSPAN9
GH12J003135 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +11.1 11101 0.6 CTCF RAD21 REST ZNF10 ZNF157 FOXK2 ZBTB17 SMC3 ZNF189 RCOR1 TSPAN9 ENSG00000278469 TSPAN9-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000278469 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000278469 Gene

Genomic Locations for ENSG00000278469 Gene
chr12:3,124,777-3,125,063
(GRCh38/hg38)
Size:
287 bases
Orientation:
Plus strand

Genomic View for ENSG00000278469 Gene

Genes around ENSG00000278469 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000278469 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000278469 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000278469 Gene

Proteins for ENSG00000278469 Gene

Post-translational modifications for ENSG00000278469 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000278469 Gene

Domains & Families for ENSG00000278469 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000278469 Gene

Function for ENSG00000278469 Gene

Phenotypes From GWAS Catalog for ENSG00000278469 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000278469 Gene

Localization for ENSG00000278469 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000278469 Gene

Pathways & Interactions for ENSG00000278469 Gene

PathCards logo

SuperPathways for ENSG00000278469 Gene

No Data Available

Interacting Proteins for ENSG00000278469 Gene

Gene Ontology (GO) - Biological Process for ENSG00000278469 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000278469 Gene

Drugs & Compounds for ENSG00000278469 Gene

No Compound Related Data Available

Transcripts for ENSG00000278469 Gene

mRNA/cDNA for ENSG00000278469 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000278469 Gene

No ASD Table

Relevant External Links for ENSG00000278469 Gene

GeneLoc Exon Structure for
ENSG00000278469

Expression for ENSG00000278469 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000278469 Gene

Orthologs for ENSG00000278469 Gene

Evolution for ENSG00000278469 Gene

ENSEMBL:
Gene Tree for ENSG00000278469 (if available)
TreeFam:
Gene Tree for ENSG00000278469 (if available)

No data available for Orthologs for ENSG00000278469 Gene

Paralogs for ENSG00000278469 Gene

No data available for Paralogs for ENSG00000278469 Gene

Variants for ENSG00000278469 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000278469 Gene

Disorders for ENSG00000278469 Gene

No disorders were found for ENSG00000278469 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000278469 Gene

Publications for ENSG00000278469 Gene

No publications were found for ENSG00000278469 Gene.

No data available for External Links for ENSG00000278469 Gene

Products for ENSG00000278469 Gene

Sources for ENSG00000278469 Gene

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