Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ENSG00000278217 Gene

Subcategory (RNA class) for ENSG00000278217 Gene

undefined

Quality Score for this RNA gene is

13.2

Aliases for ENSG00000278217 Gene

  • RF01871 5

External Ids for ENSG00000278217 Gene

ORGUL Members for ENSG00000278217 Gene

Summaries for ENSG00000278217 Gene

GeneCards Summary for ENSG00000278217 Gene

ENSG00000278217 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for ENSG00000278217 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • Metastasis associated lung adenocarcinoma transcript 1: MALAT 1 (metastasis associated lung adenocarcinoma transcript 1) is also known as NEAT2 (noncoding nuclear-enriched abundant transcript 2). It is a large, infrequently spliced RNA, which is highly conserved amongst mammals. It is highly expressed in the nucleus [1]. It is associated with metastasis, and positively regulates cell motility via the transcriptional and/or post-transcriptional regulation of motility-related genes [2].

Additional gene information for ENSG00000278217 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000278217 Gene

Genomics for ENSG00000278217 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000278217 Gene

Promoters and enhancers for ENSG00000278217 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J065470 Promoter/Enhancer 2.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.8 -12830 40 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 LOC105369346 SF1 POLA2 PCNX3 ZFPL1 EIF1AD SART1 LOC105369352 MUS81 KAT5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000278217 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000278217 Gene

Genomic Locations for ENSG00000278217 Gene
chr11:65,502,914-65,503,008
(GRCh38/hg38)
Size:
95 bases
Orientation:
Plus strand

Genomic View for ENSG00000278217 Gene

Genes around ENSG00000278217 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000278217 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000278217 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000278217 Gene

ORGUL Member Location for ENSG00000278217 gene

No data available for RefSeq DNA sequence for ENSG00000278217 Gene

Proteins for ENSG00000278217 Gene

Post-translational modifications for ENSG00000278217 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000278217 Gene

Domains & Families for ENSG00000278217 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000278217 Gene

Function for ENSG00000278217 Gene

Phenotypes From GWAS Catalog for ENSG00000278217 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000278217 Gene

Localization for ENSG00000278217 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000278217 Gene

Pathways & Interactions for ENSG00000278217 Gene

SuperPathways for ENSG00000278217 Gene

No Data Available

Interacting Proteins for ENSG00000278217 Gene

Gene Ontology (GO) - Biological Process for ENSG00000278217 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000278217 Gene

Drugs & Compounds for ENSG00000278217 Gene

No Compound Related Data Available

Transcripts for ENSG00000278217 Gene

mRNA/cDNA for ENSG00000278217 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000278217 Gene

No ASD Table

Relevant External Links for ENSG00000278217 Gene

GeneLoc Exon Structure for
ENSG00000278217

Expression for ENSG00000278217 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000278217 Gene

Orthologs for ENSG00000278217 Gene

Evolution for ENSG00000278217 Gene

ENSEMBL:
Gene Tree for ENSG00000278217 (if available)
TreeFam:
Gene Tree for ENSG00000278217 (if available)

No data available for Orthologs for ENSG00000278217 Gene

Paralogs for ENSG00000278217 Gene

No data available for Paralogs for ENSG00000278217 Gene

Variants for ENSG00000278217 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000278217 Gene

Disorders for ENSG00000278217 Gene

No disorders were found for ENSG00000278217 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000278217 Gene

Publications for ENSG00000278217 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for ENSG00000278217 Gene

Sources for ENSG00000278217 Gene

Content
Loading form....