Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ENSG00000277617 Gene

Subcategory (RNA class) for ENSG00000277617 Gene

SRP

Quality Score for this RNA gene is

13

Aliases for ENSG00000277617 Gene

  • RF00017 5

External Ids for ENSG00000277617 Gene

ORGUL Members for ENSG00000277617 Gene

Summaries for ENSG00000277617 Gene

GeneCards Summary for ENSG00000277617 Gene

ENSG00000277617 is an RNA Gene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for ENSG00000277617 Gene - the ORGUL cluster for this gene includes several descriptions:

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

Additional gene information for ENSG00000277617 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000277617 Gene

Genomics for ENSG00000277617 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000277617 Gene

Promoters and enhancers for ENSG00000277617 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J032269 Enhancer 0.5 dbSUPER 650.7 -0.4 -415 1.2 BCOR HDAC2 ZNF140 ZMYM3 ZNF18 ENSG00000277617 TXLNA RBBP4 ENSG00000224066 DCDC2B SNRNP40 KHDRBS1 TMEM39B S100PBP BSDC1
GH01J032271 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 0.7 -4.0 -3953 5.1 ZNF493 ZNF133 GLI4 ETS1 ZNF121 GLIS2 SP3 YY2 NCOA1 SMARCA4 LCK RBBP4 TXLNA IQCC ZBTB8A KHDRBS1 SNRNP40 S100PBP ZBTB8B ENSG00000224066
GH01J032262 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.2 4209 4.8 ZNF493 ZFP64 RARA ZNF213 SCRT2 ZNF654 ZNF680 ZBTB11 CEBPB ZC3H11A TXLNA KHDRBS1 SNRNP40 RBBP4 ZBTB8A TSSK3 TMEM39B ZNF362 ENSG00000224066 DCDC2B
GH01J032276 Enhancer 0.4 dbSUPER 0.4 -6.9 -6927 0.8 ZFHX2 EGR2 ENSG00000277617 ENSG00000252450 LCK
GH01J032278 Enhancer 0.2 dbSUPER 0.4 -9.5 -9506 1.1 LCK FAM167B EIF3I TMEM234 DCDC2B ENSG00000224066 IQCC CCDC28B MARCKSL1 LOC105378629
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000277617 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000277617 Gene

Genomic Locations for ENSG00000277617 Gene
chr1:32,269,338-32,269,597
(GRCh38/hg38)
Size:
260 bases
Orientation:
Minus strand

Genomic View for ENSG00000277617 Gene

Genes around ENSG00000277617 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000277617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000277617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000277617 Gene

ORGUL Member Location for ENSG00000277617 gene

No data available for RefSeq DNA sequence for ENSG00000277617 Gene

Proteins for ENSG00000277617 Gene

Post-translational modifications for ENSG00000277617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000277617 Gene

Domains & Families for ENSG00000277617 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000277617 Gene

Function for ENSG00000277617 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000277617 Gene

Localization for ENSG00000277617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000277617 Gene

Pathways & Interactions for ENSG00000277617 Gene

SuperPathways for ENSG00000277617 Gene

No Data Available

Interacting Proteins for ENSG00000277617 Gene

Gene Ontology (GO) - Biological Process for ENSG00000277617 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000277617 Gene

Drugs & Compounds for ENSG00000277617 Gene

No Compound Related Data Available

Transcripts for ENSG00000277617 Gene

mRNA/cDNA for ENSG00000277617 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000277617 Gene

No ASD Table

Relevant External Links for ENSG00000277617 Gene

GeneLoc Exon Structure for
ENSG00000277617

Expression for ENSG00000277617 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000277617 Gene

Orthologs for ENSG00000277617 Gene

Evolution for ENSG00000277617 Gene

ENSEMBL:
Gene Tree for ENSG00000277617 (if available)
TreeFam:
Gene Tree for ENSG00000277617 (if available)

No data available for Orthologs for ENSG00000277617 Gene

Paralogs for ENSG00000277617 Gene

No data available for Paralogs for ENSG00000277617 Gene

Variants for ENSG00000277617 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000277617 Gene

Disorders for ENSG00000277617 Gene

No disorders were found for ENSG00000277617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000277617 Gene

Publications for ENSG00000277617 Gene

No publications were found for ENSG00000277617 Gene.

Products for ENSG00000277617 Gene

Sources for ENSG00000277617 Gene

Content
Loading form....