ENSG00000277504 Gene (RNA Gene)

 

GC16M087683
GIFtS:
3
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Aliases for ENSG00000277504 Gene

Subcategory (RNA class) for ENSG00000277504 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000277504 Gene

  • Novel Transcript, Antisense To JPH3 5
  • Lnc-KLHDC4-73 165
  • AC010536.3 5

External Ids for ENSG00000277504 Gene

Summaries for ENSG00000277504 Gene

GeneCards Summary for ENSG00000277504 Gene

ENSG00000277504 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000277504 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000277504 Gene

Genomics for ENSG00000277504 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000277504 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J087681 Enhancer 0.7 Ensembl ENCODE 0.7 +2.2 2176 1.4 CTCF PKNOX1 CEBPB RUNX3 MAX ZNF143 ZBTB33 RAD21 KLHDC4 ENSG00000277504 piR-50737 JPH3
GH16J087661 Enhancer 1 Ensembl ENCODE 0.4 +22.6 22576 1 REST TFE3 ZNF7 ZNF143 IRF2 HDAC1 KMT2B SOX13 UBTF ZNF766 KLHDC4 piR-50737 ENSG00000277504 JPH3
GH16J087657 Enhancer 0.9 Ensembl ENCODE 0.3 +26.1 26110 1.3 SP1 ZNF512 SIX5 PRDM1 ZNF143 RUNX3 USF1 YY1 ZNF217 MYC KLHDC4 piR-50737 ENSG00000277504 JPH3
GH16J087674 Enhancer 0.3 Ensembl 0.4 +9.5 9476 1.6 KLF9 SPI1 ENSG00000226180 KLHDC4 ENSG00000277504 piR-50737 JPH3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000277504 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000277504 Gene

Genomic Locations for ENSG00000277504 Gene
chr16:87,683,945-87,684,477
(GRCh38/hg38)
Size:
533 bases
Orientation:
Minus strand

Genomic View for ENSG00000277504 Gene

Genes around ENSG00000277504 on UCSC Golden Path with GeneCards custom track
ENSG00000277504 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000277504 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000277504 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000277504 Gene

Proteins for ENSG00000277504 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000277504 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000277504 Gene

Domains & Families for ENSG00000277504 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000277504 Gene

Function for ENSG00000277504 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000277504 Gene

Localization for ENSG00000277504 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000277504 Gene

Pathways & Interactions for ENSG00000277504 Gene

PathCards logo

SuperPathways for ENSG00000277504 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000277504 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000277504 Gene

Drugs & Compounds for ENSG00000277504 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000277504 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000277504 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000772831_9606 lncRNA 533 2

Ensembl: ENST00000620306 (view in UCSC) ,

LNCipedia: lnc-KLHDC4-73:1,

ENSG00000277504 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000277504 Gene

No ASD Table

Relevant External Links for ENSG00000277504 Gene

GeneLoc Exon Structure for
ENSG00000277504

No data available for mRNA/cDNA for ENSG00000277504 Gene

Expression for ENSG00000277504 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000277504 Gene

Orthologs for ENSG00000277504 Gene

Evolution for ENSG00000277504 Gene

ENSEMBL:
Gene Tree for ENSG00000277504 (if available)
TreeFam:
Gene Tree for ENSG00000277504 (if available)

No data available for Orthologs for ENSG00000277504 Gene

Paralogs for ENSG00000277504 Gene

No data available for Paralogs for ENSG00000277504 Gene

Variants for ENSG00000277504 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000277504 Gene

Disorders for ENSG00000277504 Gene

No disorders were found for ENSG00000277504 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000277504 Gene

Publications for ENSG00000277504 Gene

No publications were found for ENSG00000277504 Gene.

No data available for Mastermind for ENSG00000277504 Gene

Products for ENSG00000277504 Gene

Sources for ENSG00000277504 Gene