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Aliases for ENSG00000277223 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000277223 Gene

  • Novel Transcript, Sense Intronic To LGR5 5
  • AC090116.1 5

External Ids for ENSG00000277223 Gene

Summaries for ENSG00000277223 Gene

GeneCards Summary for ENSG00000277223 Gene

ENSG00000277223 is an RNA Gene.

Additional gene information for ENSG00000277223 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000277223 Gene

Genomics for ENSG00000277223 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000277223 Gene

Promoters and enhancers for ENSG00000277223 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J071447 Enhancer 0.7 Ensembl 600.7 -0.2 -204 1.2 ZNF121 PRDM1 ZNF600 ZIC2 ZSCAN4 ZNF792 SCRT2 ZBTB44 ZBTB48 MYNN ENSG00000277223 ZFC3H1 LGR5 TSPAN8
GH12J071438 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -6.5 -6454 6.5 ZNF652 ELF3 CTCF POLR2A CEBPG RERE AHR ZNF24 TFE3 YY1 LGR5 TSPAN8 ENSG00000277223
GH12J071456 Enhancer 1.2 UCNEbase Ensembl 0.4 +7.9 7896 3.4 POLR2A SP7 MZF1 PKNOX1 ZBTB8A ZIC2 ZSCAN4 KLF7 ZNF629 ZNF561 LGR5 ENSG00000277223 LOC105369833
GH12J071469 Enhancer 1 Ensembl ENCODE 0.3 +20.7 20696 1.8 SP7 EGR1 FOSL2 CREB1 PKNOX1 IKZF1 ZNF600 ZEB2 ZNF629 ZXDB LGR5 TSPAN8 ENSG00000277223 LOC105369833
GH12J071472 Enhancer 0.8 Ensembl ENCODE 0.3 +24.4 24395 0.8 GATAD2A SOX13 TCF7 FOXA2 TEAD1 CREM CUX1 BCL6 RARA HMG20A LGR5 ENSG00000277223 LOC105369833
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000277223 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000277223 Gene

Genomic Locations for ENSG00000277223 Gene
chr12:71,448,405-71,448,850
(GRCh38/hg38)
Size:
446 bases
Orientation:
Plus strand

Genomic View for ENSG00000277223 Gene

Genes around ENSG00000277223 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000277223 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000277223 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000277223 Gene

Proteins for ENSG00000277223 Gene

Post-translational modifications for ENSG00000277223 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000277223 Gene

Domains & Families for ENSG00000277223 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000277223 Gene

Function for ENSG00000277223 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000277223 Gene

Localization for ENSG00000277223 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000277223 Gene

Pathways & Interactions for ENSG00000277223 Gene

PathCards logo

SuperPathways for ENSG00000277223 Gene

No Data Available

Interacting Proteins for ENSG00000277223 Gene

Gene Ontology (GO) - Biological Process for ENSG00000277223 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000277223 Gene

Drugs & Compounds for ENSG00000277223 Gene

No Compound Related Data Available

Transcripts for ENSG00000277223 Gene

mRNA/cDNA for ENSG00000277223 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000277223 Gene

No ASD Table

Relevant External Links for ENSG00000277223 Gene

GeneLoc Exon Structure for
ENSG00000277223

Expression for ENSG00000277223 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000277223 Gene

Orthologs for ENSG00000277223 Gene

Evolution for ENSG00000277223 Gene

ENSEMBL:
Gene Tree for ENSG00000277223 (if available)
TreeFam:
Gene Tree for ENSG00000277223 (if available)

No data available for Orthologs for ENSG00000277223 Gene

Paralogs for ENSG00000277223 Gene

No data available for Paralogs for ENSG00000277223 Gene

Variants for ENSG00000277223 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000277223 Gene

Disorders for ENSG00000277223 Gene

No disorders were found for ENSG00000277223 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000277223 Gene

Publications for ENSG00000277223 Gene

No publications were found for ENSG00000277223 Gene.

No data available for External Links for ENSG00000277223 Gene

Products for ENSG00000277223 Gene

Sources for ENSG00000277223 Gene

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