Aliases for ENSG00000277173 Gene

Subcategory (RNA class) for ENSG00000277173 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000277173 Gene

  • Novel Transcript, Sense Intronic To SLC48A1 5
  • Lnc-TMEM106C-6 168
  • HSALNG0090791 167
  • NONHSAG011021 92
  • AC004241.4 5

External Ids for ENSG00000277173 Gene

Summaries for ENSG00000277173 Gene

GeneCards Summary for ENSG00000277173 Gene

ENSG00000277173 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000277173 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000277173 Gene

Genomics for ENSG00000277173 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000277173 Gene

Promoters and enhancers for ENSG00000277173 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J047767 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 500.7 -0.9 -929 0.8 CTCF ZIC2 REST CUX1 RAD21 TRIM22 SMC3 ZNF654 ARID3A MAX ENSG00000277173 ENSG00000268069 RAPGEF3 lnc-HDAC7-1 SLC48A1
GH12J047768 Enhancer 1.1 ENCODE dbSUPER 500.7 +0.2 179 0.9 ZSCAN5C TEAD4 ZIC2 ZBTB10 ZNF423 KLF7 EP300 CTBP1 TEAD1 ZEB1 ENSG00000277173 CCNT1 KANSL2 HDAC7 ENSG00000268069 RPAP3 CCDC184 SENP1 RAPGEF3 SLC48A1
GH12J047769 Promoter/Enhancer 1 Ensembl dbSUPER 500.7 +1.2 1172 0.6 ATF2 OSR2 CEBPG CEBPB ZNF213 ZBTB48 IKZF3 ZNF843 RCOR1 PRDM6 ENSG00000277173 RAPGEF3 SLC48A1
GH12J047771 Enhancer 0.8 ENCODE dbSUPER 500.7 +1.7 1704 0.2 CEBPB ZBTB17 TRIM24 CEBPG ZNF335 EP300 RFX5 BCL6 STAT3 RXRA ENSG00000277173 RAPGEF3 SLC48A1
GH12J047765 Promoter/Enhancer 0.8 Ensembl dbSUPER 0.7 -2.2 -2228 1 MXI1 POLR2A CEBPB RCOR1 HLF CHD2 CTCF MYC RAPGEF3 ENSG00000268069 ENSG00000277173 lnc-HDAC7-1 SLC48A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000277173 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000277173 Gene

Genomic Locations for ENSG00000277173 Gene
chr12:47,768,529-47,769,648
(GRCh38/hg38)
Size:
1,120 bases
Orientation:
Plus strand

Genomic View for ENSG00000277173 Gene

Genes around ENSG00000277173 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000277173 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000277173 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000277173 Gene

Proteins for ENSG00000277173 Gene

Post-translational modifications for ENSG00000277173 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000277173 Gene

Domains & Families for ENSG00000277173 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000277173 Gene

Function for ENSG00000277173 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000277173 Gene

Localization for ENSG00000277173 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000277173 Gene

Pathways & Interactions for ENSG00000277173 Gene

PathCards logo

SuperPathways for ENSG00000277173 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000277173 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000277173 Gene

Drugs & Compounds for ENSG00000277173 Gene

No Compound Related Data Available

Transcripts for ENSG00000277173 Gene

mRNA/cDNA for ENSG00000277173 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000277173 Gene

No ASD Table

Relevant External Links for ENSG00000277173 Gene

GeneLoc Exon Structure for
ENSG00000277173

Expression for ENSG00000277173 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000277173 Gene

Orthologs for ENSG00000277173 Gene

Evolution for ENSG00000277173 Gene

ENSEMBL:
Gene Tree for ENSG00000277173 (if available)
TreeFam:
Gene Tree for ENSG00000277173 (if available)

No data available for Orthologs for ENSG00000277173 Gene

Paralogs for ENSG00000277173 Gene

No data available for Paralogs for ENSG00000277173 Gene

Variants for ENSG00000277173 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000277173 Gene

Disorders for ENSG00000277173 Gene

No disorders were found for ENSG00000277173 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000277173 Gene

Publications for ENSG00000277173 Gene

No publications were found for ENSG00000277173 Gene.

No data available for Mastermind for ENSG00000277173 Gene

Products for ENSG00000277173 Gene

Sources for ENSG00000277173 Gene