Aliases for ENSG00000277089 Gene

Data sources for ENSG00000277089 Gene:

RNA type for ENSG00000277089 Gene

lncRNA

Aliases for ENSG00000277089 Gene

External Ids for ENSG00000277089 Gene

Summaries for ENSG00000277089 Gene

GeneCards Summary for ENSG00000277089 Gene

ENSG00000277089 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000277089 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000277089 Gene

Genomics for ENSG00000277089 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000277089 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J036072 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 250.7 -0.4 -364 1.4 BCLAF1 ZNF654 ZNF10 BCL11A CTCF REST TRIM22 MAFF IRF4 SMC3 CCL3-AS1 ENSG00000277089 HEATR9 LYZL6 C17orf50 CCL5 MYO19 RDM1 HSALNG0116002 CCL18
GH17J036088 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.4 +17.1 17132 3.7 BCLAF1 SP1 ZNF207 POLR2A BCL11A TRIM22 IRF4 EBF1 CBFB ASH2L CCL3 lnc-CCL3-1 CCL18 CCL4 CCL3-AS1 ENSG00000277089
GH17J036081 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +9.4 9403 2.3 BCLAF1 SP1 ZNF207 GABPA EBF1 SMARCA5 BHLHE40 ELF1 IKZF1 BMI1 CCL4 ENSG00000267074 CCL3 CCL3-AS1 ENSG00000277089 lnc-CCL3-1 CCL18
GH17J036102 Promoter/Enhancer 1.7 EPDnew FANTOM5 Ensembl ENCODE 0.3 +33.1 33140 6.2 ATF2 ZNF223 TRIM22 ZNF341 EBF1 BHLHE40 SPI1 ZNF189 POLR2A ELF1 CCL4 CCL3 CCL3L3 CCL5 CCL18 CCL15 PIGW SLFN12L MYO19 GGNBP2
GH17J036073 Enhancer 0.5 dbSUPER 0.7 +2.2 2168 2.6 BCL11A IRF4 BATF IKZF1 JUNB IKZF2 RUNX3 CCL3-AS1 ENSG00000277089 CCL18 CCL3 lnc-CCL3-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000277089 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000277089 Gene

Latest Assembly
chr17:36,072,865-36,104,524
(GRCh38/hg38)
Size:
31,660 bases
Orientation:
Plus strand

Genomic View for ENSG00000277089 Gene

Genes around ENSG00000277089 on UCSC Golden Path with GeneCards custom track
ENSG00000277089 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000277089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000277089 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000277089 Gene

Proteins for ENSG00000277089 Gene

Post-translational modifications for ENSG00000277089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000277089 Gene

Domains & Families for ENSG00000277089 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000277089 Gene

Function for ENSG00000277089 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000277089 Gene

Localization for ENSG00000277089 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000277089 Gene

Pathways & Interactions for ENSG00000277089 Gene

PathCards logo

SuperPathways for ENSG00000277089 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000277089 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000277089 Gene

Drugs & Compounds for ENSG00000277089 Gene

No Compound Related Data Available

Transcripts for ENSG00000277089 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000277089 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003A7CD3_9606 lncRNA 415 4

Ensembl: ENST00000610845 (view in UCSC) ,

LncBook: HSALNT0239859,

LNCipedia: lnc-CCL18-1:3,

NONCODE: NONHSAT053171.2,

URS0000000AA1_9606 lncRNA 395 4

Ensembl: ENST00000615750 (view in UCSC) ,

LncBook: HSALNT0239862,

LNCipedia: lnc-CCL18-1:1,

NONCODE: NONHSAT053172.2,

URS0000116324_9606 lncRNA 701 3

Ensembl: ENST00000620056 (view in UCSC) ,

LNCipedia: lnc-CCL18-1:2,

NONCODE: NONHSAT053170.2,

URS00001A9A2E_9606 lncRNA 1115 2

Ensembl: ENST00000616926 (view in UCSC) ,

NONCODE: NONHSAT053174.2,

URS0000D583E1_9606 lncRNA 450 2

LncBook: HSALNT0239869,

LNCipedia: lnc-CCL18-1:11,

ENSG00000277089 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000277089 Gene

No ASD Table

Relevant External Links for ENSG00000277089 Gene

GeneLoc Exon Structure for
ENSG00000277089

No data available for mRNA/cDNA for ENSG00000277089 Gene

Expression for ENSG00000277089 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000277089 Gene

Orthologs for ENSG00000277089 Gene

Evolution for ENSG00000277089 Gene

ENSEMBL:
Gene Tree for ENSG00000277089 (if available)
TreeFam:
Gene Tree for ENSG00000277089 (if available)

No data available for Orthologs for ENSG00000277089 Gene

Paralogs for ENSG00000277089 Gene

No data available for Paralogs for ENSG00000277089 Gene

Variants for ENSG00000277089 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000277089 Gene

Disorders for ENSG00000277089 Gene

Additional Disease Information for ENSG00000277089

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000277089 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000277089 Gene

Publications for ENSG00000277089 Gene

No publications were found for ENSG00000277089 Gene.

No data available for Mastermind for ENSG00000277089 Gene

Products for ENSG00000277089 Gene

Sources for ENSG00000277089 Gene