Aliases for ENSG00000277089 Gene

Subcategory (RNA class) for ENSG00000277089 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000277089 Gene

  • Novel Transcript, Antisense CCL3 5
  • HSALNG0116003 167
  • NONHSAG021579 92
  • Lnc-CCL18-1 168
  • AC243829.4 5

External Ids for ENSG00000277089 Gene

Additional External Ids for ENSG00000277089 Gene

Summaries for ENSG00000277089 Gene

GeneCards Summary for ENSG00000277089 Gene

ENSG00000277089 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000277089 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000277089 Gene

Genomics for ENSG00000277089 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000277089 Gene

Promoters and enhancers for ENSG00000277089 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J036072 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 500.7 -0.4 -365 1.4 CTCF ZNF10 EP300 REST MEF2C RCOR1 RAD21 TRIM22 SMC3 BCL11A ENSG00000277089 HEATR9 LYZL6 C17orf50 CCL5 MYO19 RDM1 CCL18
GH17J036065 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.6 -4565 6.2 EP300 YY1 TBX21 MAFK ZC3H11A ATF7 TEAD4 BHLHE40 MAX MTA2 CCL5 CCL3 CCL4 MYO19 PIGW CCL3L3 CCL18 ENSG00000277089
GH17J036088 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.4 +17.1 17131 3.7 SP1 EP300 POLR2A JUND RELA MEF2C TRIM22 BCL11A TCF12 CBFB CCL3 lnc-CCL3-1 CCL18 CCL4 ENSG00000277089
GH17J036081 Enhancer 0.9 ENCODE dbSUPER 0.4 +9.4 9402 2.3 ZBTB40 SP1 ZNF207 MEF2B NBN ZBTB11 SMARCA5 ELF1 GABPA EBF1 CCL4 ENSG00000267074 CCL3 ENSG00000277089 lnc-CCL3-1
GH17J036073 Enhancer 0.5 dbSUPER 0.7 +2.2 2167 2.6 BCL11A BATF IRF4 IKZF1 TBX21 JUNB IKZF2 RUNX3 SKIL ENSG00000277089 lnc-CCL3-1 CCL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000277089 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000277089 Gene

Genomic Locations for ENSG00000277089 Gene
chr17:36,072,866-36,090,134
(GRCh38/hg38)
Size:
17,269 bases
Orientation:
Plus strand

Genomic View for ENSG00000277089 Gene

Genes around ENSG00000277089 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000277089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000277089 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000277089 Gene

Proteins for ENSG00000277089 Gene

Post-translational modifications for ENSG00000277089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000277089 Gene

Domains & Families for ENSG00000277089 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000277089 Gene

Function for ENSG00000277089 Gene

Phenotypes From GWAS Catalog for ENSG00000277089 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000277089 Gene

Localization for ENSG00000277089 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000277089 Gene

Pathways & Interactions for ENSG00000277089 Gene

PathCards logo

SuperPathways for ENSG00000277089 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000277089 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000277089 Gene

Drugs & Compounds for ENSG00000277089 Gene

No Compound Related Data Available

Transcripts for ENSG00000277089 Gene

mRNA/cDNA for ENSG00000277089 Gene

7 RNACentral transcripts :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000277089 Gene

No ASD Table

Relevant External Links for ENSG00000277089 Gene

GeneLoc Exon Structure for
ENSG00000277089

Expression for ENSG00000277089 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000277089 Gene

Orthologs for ENSG00000277089 Gene

Evolution for ENSG00000277089 Gene

ENSEMBL:
Gene Tree for ENSG00000277089 (if available)
TreeFam:
Gene Tree for ENSG00000277089 (if available)

No data available for Orthologs for ENSG00000277089 Gene

Paralogs for ENSG00000277089 Gene

No data available for Paralogs for ENSG00000277089 Gene

Variants for ENSG00000277089 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000277089 Gene

Disorders for ENSG00000277089 Gene

No disorders were found for ENSG00000277089 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000277089 Gene

Publications for ENSG00000277089 Gene

No publications were found for ENSG00000277089 Gene.

No data available for Mastermind for ENSG00000277089 Gene

Products for ENSG00000277089 Gene

Sources for ENSG00000277089 Gene