Aliases for ENSG00000276842 Gene

Subcategory (RNA class) for ENSG00000276842 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000276842 Gene

  • Novel Transcript, Antisense To LRMP 5
  • Lnc-CASC1-3 165
  • AC023510.2 5

External Ids for ENSG00000276842 Gene

Summaries for ENSG00000276842 Gene

GeneCards Summary for ENSG00000276842 Gene

ENSG00000276842 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000276842 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000276842 Gene

Genomics for ENSG00000276842 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000276842 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J025106 Enhancer 0.9 Ensembl dbSUPER 0.7 -4.3 -4331 1.2 BACH1 JUND RELA TCF12 IKZF2 RCOR1 TRIM22 PKNOX1 EED ARID3A ENSG00000276842 piR-31311-006 CFAP94 C12orf77 IRAG2
GH12J025135 Enhancer 0.7 Ensembl ENCODE 0.3 -31.9 -31872 1.3 CTCF FOXA1 ZIC2 RFX1 OSR2 WT1 ZFHX2 ZNF143 RAD21 EGR2 ETFRF1 CFAP94 KRAS piR-31311-006 ENSG00000276842 lnc-KRAS-2 C12orf77
GH12J025150 Enhancer 0.8 Ensembl ENCODE 0.3 -48.1 -48055 2 CREB1 ATF7 ZNF629 JUND CEBPB USF1 FOS ZBTB17 ATF2 BHLHE40 CFAP94 KRAS piR-31311-006 lnc-KRAS-2 ENSG00000276842 C12orf77
GH12J025154 Enhancer 0.8 Ensembl ENCODE 0.2 -52.4 -52432 3.4 CTCF PRDM1 REST RAD21 RCOR1 TRIM22 CEBPA CEBPB SIN3A ZBTB40 CFAP94 KRAS piR-31311-006 lnc-KRAS-2 ENSG00000276842 C12orf77
GH12J025115 Enhancer 0.3 Ensembl 0.4 -12.0 -12032 0.2 FOXA1 ZNF140 C12orf77 ENSG00000276842 piR-31311-006 lnc-KRAS-2 CFAP94
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000276842 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000276842 Gene

Genomic Locations for ENSG00000276842 Gene
chr12:25,103,124-25,103,869
(GRCh38/hg38)
Size:
746 bases
Orientation:
Minus strand

Genomic View for ENSG00000276842 Gene

Genes around ENSG00000276842 on UCSC Golden Path with GeneCards custom track
ENSG00000276842 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000276842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000276842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000276842 Gene

Proteins for ENSG00000276842 Gene

Post-translational modifications for ENSG00000276842 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000276842 Gene

Domains & Families for ENSG00000276842 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000276842 Gene

Function for ENSG00000276842 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000276842 Gene

Localization for ENSG00000276842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000276842 Gene

Pathways & Interactions for ENSG00000276842 Gene

PathCards logo

SuperPathways for ENSG00000276842 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000276842 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000276842 Gene

Drugs & Compounds for ENSG00000276842 Gene

No Compound Related Data Available

Transcripts for ENSG00000276842 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000276842 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000076C1B0_9606 lncRNA 746 2

Ensembl: ENST00000622162 (view in UCSC) ,

LNCipedia: lnc-CASC1-3:1,

ENSG00000276842 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000276842 Gene

No ASD Table

Relevant External Links for ENSG00000276842 Gene

GeneLoc Exon Structure for
ENSG00000276842

No data available for mRNA/cDNA for ENSG00000276842 Gene

Expression for ENSG00000276842 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000276842 Gene

Orthologs for ENSG00000276842 Gene

Evolution for ENSG00000276842 Gene

ENSEMBL:
Gene Tree for ENSG00000276842 (if available)
TreeFam:
Gene Tree for ENSG00000276842 (if available)

No data available for Orthologs for ENSG00000276842 Gene

Paralogs for ENSG00000276842 Gene

No data available for Paralogs for ENSG00000276842 Gene

Variants for ENSG00000276842 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000276842 Gene

Disorders for ENSG00000276842 Gene

Additional Disease Information for ENSG00000276842

No disorders were found for ENSG00000276842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000276842 Gene

Publications for ENSG00000276842 Gene

No publications were found for ENSG00000276842 Gene.

No data available for Mastermind for ENSG00000276842 Gene

Products for ENSG00000276842 Gene

Sources for ENSG00000276842 Gene