Aliases for ENSG00000275734 Gene

Subcategory (RNA class) for ENSG00000275734 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000275734 Gene

  • Novel Transcript, Sense Overlapping CDK10 5
  • NONHSAG020357.2 91
  • HSALNG0113629 164
  • Lnc-SPATA33-3 165
  • AC010538.1 5

External Ids for ENSG00000275734 Gene

Previous GeneCards Identifiers for ENSG00000275734 Gene

  • GC16P089684

Summaries for ENSG00000275734 Gene

GeneCards Summary for ENSG00000275734 Gene

ENSG00000275734 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000275734 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000275734 Gene

Genomics for ENSG00000275734 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000275734 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J089671 Enhancer 0.6 Ensembl 600.7 -0.5 -467 1 JUND ZNF580 FOS ZBTB11 BCOR RAD21 ZNF384 FOSL2 JUN KDM1A ENSG00000275734 CDK10 SPATA33 lnc-CDK10-1
GH16J089670 Enhancer 0.4 Ensembl 600.7 -1.3 -1268 0.2 ZBTB11 RAD21 CTCF SMC3 ENSG00000275734 CDK10 SPATA33 lnc-CDK10-1
GH16J089672 Enhancer 0.2 Ensembl 600.7 +1.0 1033 0.4 ENSG00000275734 CDK10 SPATA33
GH16J089686 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +15.7 15707 2.5 SP1 HNRNPL GATAD2A REST TFE3 RFX1 SOX13 IKZF1 NFKBIZ ZNF692 CDK10 LINC02166 DPEP1 VPS9D1 ZNF276 FANCA NONHSAG020359.2 SPATA2L ENSG00000275734
GH16J089664 Enhancer 0.5 Ensembl 0.4 -7.3 -7267 0.2 CREB1 EGR1 ZFHX2 CREM ATF3 ATF2 EGR2 ATF7 ATF1 GALNS ENSG00000275734 SPATA33 lnc-CDK10-1 CDK10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000275734 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000275734 Gene

Genomic Locations for ENSG00000275734 Gene
chr16:89,671,568-89,686,296
(GRCh38/hg38)
Size:
14,729 bases
Orientation:
Plus strand

Genomic View for ENSG00000275734 Gene

Genes around ENSG00000275734 on UCSC Golden Path with GeneCards custom track
ENSG00000275734 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000275734 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000275734 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000275734 Gene

Proteins for ENSG00000275734 Gene

Post-translational modifications for ENSG00000275734 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000275734 Gene

Domains & Families for ENSG00000275734 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000275734 Gene

Function for ENSG00000275734 Gene

Phenotypes From GWAS Catalog for ENSG00000275734 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000275734 Gene

Localization for ENSG00000275734 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000275734 Gene

Pathways & Interactions for ENSG00000275734 Gene

PathCards logo

SuperPathways for ENSG00000275734 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000275734 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000275734 Gene

Drugs & Compounds for ENSG00000275734 Gene

No Compound Related Data Available

Transcripts for ENSG00000275734 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000275734 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB9DC8_9606 lncRNA 3077 1

Ensembl: ENST00000615131 (view in UCSC) ,

URS00008B211F_9606 lncRNA 677 2

LncBook: HSALNT0235526,

NONCODE: NONHSAT144564.2,

URS00008BF75E_9606 lncRNA 586 2

LncBook: HSALNT0235527,

NONCODE: NONHSAT144565.2,

URS0000768465_9606 lncRNA 663 1

LNCipedia: lnc-SPATA33-3:1,

ENSG00000275734 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000275734 Gene

No ASD Table

Relevant External Links for ENSG00000275734 Gene

GeneLoc Exon Structure for
ENSG00000275734

No data available for mRNA/cDNA for ENSG00000275734 Gene

Expression for ENSG00000275734 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000275734 Gene

Orthologs for ENSG00000275734 Gene

Evolution for ENSG00000275734 Gene

ENSEMBL:
Gene Tree for ENSG00000275734 (if available)
TreeFam:
Gene Tree for ENSG00000275734 (if available)

No data available for Orthologs for ENSG00000275734 Gene

Paralogs for ENSG00000275734 Gene

No data available for Paralogs for ENSG00000275734 Gene

Variants for ENSG00000275734 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000275734 Gene

Disorders for ENSG00000275734 Gene

Additional Disease Information for ENSG00000275734

No disorders were found for ENSG00000275734 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000275734 Gene

Publications for ENSG00000275734 Gene

No publications were found for ENSG00000275734 Gene.

No data available for Mastermind for ENSG00000275734 Gene

Products for ENSG00000275734 Gene

Sources for ENSG00000275734 Gene