Aliases for ENSG00000275680 Gene

Subcategory (RNA class) for ENSG00000275680 Gene

misc_RNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000275680 Gene

  • AC100832.3 5
  • RF00017 168

External Ids for ENSG00000275680 Gene

Summaries for ENSG00000275680 Gene

GeneCards Summary for ENSG00000275680 Gene

ENSG00000275680 is an RNA Gene, and is affiliated with the misc_RNA class.

Rfam classification for ENSG00000275680 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for ENSG00000275680 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000275680 Gene

Genomics for ENSG00000275680 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000275680 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J058945 Enhancer 0.8 Ensembl ENCODE 0.7 -5.0 -4984 6 CEBPG YBX1 MNT DDX20 NFXL1 CSDE1 SIX4 ZFP64 TOE1 E2F4 TRIM37 RAD51C MKS1 SRSF1 PPM1E NDUFB8P2 TUBD1 SMG8 ENSG00000275680 RF00017-2470
GH17J058957 Enhancer 0.7 Ensembl ENCODE 0.4 +5.9 5934 1.8 CEBPG EGR1 CEBPB FOXA2 PRDM6 JUN MEIS2 JUND ZBTB12 GATA3 RAD51C TRIM37 lnc-TRIM37-2 ENSG00000275680 PPM1E
GH17J058960 Enhancer 0.7 Ensembl ENCODE 0.4 +9.2 9187 1 CTCF FOXA1 RAD21 YY1 SMC3 NFIC GATA3 TFAP4 RXRA NFIA lnc-TRIM37-2 ENSG00000275680 TRIM37 PPM1E
GH17J058953 Enhancer 0.4 Ensembl 0.7 +3.1 3116 2.6 ZNF766 CTCF SPI1 TRIM37 RAD51C PPM1E ENSG00000275680 lnc-TRIM37-2
GH17J058935 Enhancer 0.4 FANTOM5 0.4 -15.6 -15639 0.4 YBX1 MNT CREB1 PPP1R10 MKS1 SRSF1 NDUFB8P2 TUBD1 SEPTIN4 RF00017-2470 ENSG00000275680 PPM1E TRIM37
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000275680 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000275680 Gene

Genomic Locations for ENSG00000275680 Gene
chr17:58,951,185-58,951,514
(GRCh38/hg38)
Size:
330 bases
Orientation:
Plus strand

Genomic View for ENSG00000275680 Gene

Genes around ENSG00000275680 on UCSC Golden Path with GeneCards custom track
ENSG00000275680 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000275680 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000275680 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000275680 Gene

Proteins for ENSG00000275680 Gene

Post-translational modifications for ENSG00000275680 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000275680 Gene

Domains & Families for ENSG00000275680 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000275680 Gene

Function for ENSG00000275680 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000275680 Gene

Localization for ENSG00000275680 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000275680 Gene

Pathways & Interactions for ENSG00000275680 Gene

PathCards logo

SuperPathways for ENSG00000275680 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000275680 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000275680 Gene

Drugs & Compounds for ENSG00000275680 Gene

No Compound Related Data Available

Transcripts for ENSG00000275680 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000275680 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A9B683_9606 SRP_RNA 329 1

Ensembl: ENST00000613789 (view in UCSC) ,

URS000094B88C_9606 SRP_RNA 330 1

Rfam: RF00017,

ENSG00000275680 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000275680 Gene

No ASD Table

Relevant External Links for ENSG00000275680 Gene

GeneLoc Exon Structure for
ENSG00000275680

No data available for mRNA/cDNA for ENSG00000275680 Gene

Expression for ENSG00000275680 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000275680 Gene

Orthologs for ENSG00000275680 Gene

Evolution for ENSG00000275680 Gene

ENSEMBL:
Gene Tree for ENSG00000275680 (if available)
TreeFam:
Gene Tree for ENSG00000275680 (if available)

No data available for Orthologs for ENSG00000275680 Gene

Paralogs for ENSG00000275680 Gene

No data available for Paralogs for ENSG00000275680 Gene

Variants for ENSG00000275680 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000275680 Gene

Disorders for ENSG00000275680 Gene

Additional Disease Information for ENSG00000275680

No disorders were found for ENSG00000275680 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000275680 Gene

Publications for ENSG00000275680 Gene

No publications were found for ENSG00000275680 Gene.

No data available for Mastermind for ENSG00000275680 Gene

Products for ENSG00000275680 Gene

Sources for ENSG00000275680 Gene