Aliases for ENSG00000275393 Gene

Subcategory (RNA class) for ENSG00000275393 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000275393 Gene

  • Novel Transcript, Sense Intronic To C16orf74 5
  • HSALNG0113227 164
  • Lnc-GINS2-4 165
  • AC018695.6 5

External Ids for ENSG00000275393 Gene

Previous GeneCards Identifiers for ENSG00000275393 Gene

  • GC16M085697

Summaries for ENSG00000275393 Gene

GeneCards Summary for ENSG00000275393 Gene

ENSG00000275393 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000275393 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000275393 Gene

Genomics for ENSG00000275393 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000275393 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J085859 Enhancer 0.7 ENCODE 600.7 -0.2 -234 1 LARP7 RELA IKZF2 PKNOX1 EED DPF2 RELB RUNX3 GATAD2B TCF12 ENSG00000275393 ENSG00000279907 RF00017-2180 lnc-IRF8-8 IRF8 EMC8
GH16J085860 Enhancer 0.6 ENCODE 600.7 +0.8 753 0.2 RELA RUNX3 GATAD2B IKZF1 EBF1 STAT5A ATF7 TARDBP ETV6 ZBTB33 ENSG00000275393 ENSG00000279907 lnc-IRF8-8 IRF8 EMC8
GH16J085798 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.2 +60.7 60724 3.9 CREB1 GATAD2A HNRNPL ATF7 PRDM10 ZNF629 TFE3 NFKBIZ POLR2A ZNF7 COX4I1 EMC8 piR-59610 GSE1 C16orf74 ENSG00000275393
GH16J085821 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 +38.5 38462 1.6 BRCA1 CREB1 GATAD2A CTCF PRDM10 JUND ZNF143 PHF21A ZIC2 RXRB IRF8 COX4I1 RPL10AP12 ENSG00000286510 EMC8 ENSG00000275393
GH16J085844 Enhancer 0.9 FANTOM5 ENCODE 0.4 +15.3 15344 0.3 GATAD2A FOXA1 RXRB IRF2 CEBPA SOX13 TCF7 FOXA2 CREM FOXP1 ENSG00000286510 IRF8 COX4I1 EMC8 lnc-EMC8-5 ENSG00000275393 RPL10AP12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000275393 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000275393 Gene

Genomic Locations for ENSG00000275393 Gene
chr16:85,641,063-85,860,263
(GRCh38/hg38)
Size:
219,201 bases
Orientation:
Minus strand

Genomic View for ENSG00000275393 Gene

Genes around ENSG00000275393 on UCSC Golden Path with GeneCards custom track
ENSG00000275393 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000275393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000275393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000275393 Gene

Proteins for ENSG00000275393 Gene

Post-translational modifications for ENSG00000275393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000275393 Gene

Domains & Families for ENSG00000275393 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000275393 Gene

Function for ENSG00000275393 Gene

Phenotypes From GWAS Catalog for ENSG00000275393 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000275393 Gene

Localization for ENSG00000275393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000275393 Gene

Pathways & Interactions for ENSG00000275393 Gene

PathCards logo

SuperPathways for ENSG00000275393 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000275393 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000275393 Gene

Drugs & Compounds for ENSG00000275393 Gene

No Compound Related Data Available

Transcripts for ENSG00000275393 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000275393 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007823ED_9606 lncRNA 534 3

Ensembl: ENST00000614011 (view in UCSC) ,

LncBook: HSALNT0234663,

LNCipedia: lnc-GINS2-4:2,

URS00008BF0DE_9606 lncRNA 1650 1

LNCipedia: lnc-GINS2-4:1,

ENSG00000275393 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000275393 Gene

No ASD Table

Relevant External Links for ENSG00000275393 Gene

GeneLoc Exon Structure for
ENSG00000275393

No data available for mRNA/cDNA for ENSG00000275393 Gene

Expression for ENSG00000275393 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000275393 Gene

Orthologs for ENSG00000275393 Gene

Evolution for ENSG00000275393 Gene

ENSEMBL:
Gene Tree for ENSG00000275393 (if available)
TreeFam:
Gene Tree for ENSG00000275393 (if available)

No data available for Orthologs for ENSG00000275393 Gene

Paralogs for ENSG00000275393 Gene

No data available for Paralogs for ENSG00000275393 Gene

Variants for ENSG00000275393 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000275393 Gene

Disorders for ENSG00000275393 Gene

No disorders were found for ENSG00000275393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000275393 Gene

Publications for ENSG00000275393 Gene

No publications were found for ENSG00000275393 Gene.

No data available for Mastermind for ENSG00000275393 Gene

Products for ENSG00000275393 Gene

Sources for ENSG00000275393 Gene