Aliases for ENSG00000275263 Gene

Subcategory (RNA class) for ENSG00000275263 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000275263 Gene

  • Novel Transcript 5
  • Lnc-STX1B-1 165
  • AC135048.3 5

External Ids for ENSG00000275263 Gene

Summaries for ENSG00000275263 Gene

GeneCards Summary for ENSG00000275263 Gene

ENSG00000275263 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000275263 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000275263 Gene

Genomics for ENSG00000275263 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000275263 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J030956 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.7 -692 3.4 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 ZNF512 LEF1 IKZF1 NFKBIZ SETD1A ENSG00000275263 SRCAP INO80E ZNF764 ENSG00000260267 SMG1P5 RNF40 ENSG00000260304 NPIPB13
GH16J030957 Promoter/Enhancer 0.9 Ensembl dbSUPER 600.7 +1.1 1098 0.2 ZNF512 HMBOX1 BCOR ZMYM3 ZSCAN5A ZNF664 POLR2A CBFA2T3 ZNF121 ENSG00000275263 SETD1A ENSG00000261487 ORAI3 piR-49451
GH16J030982 Enhancer 0.7 FANTOM5 ENCODE 0.3 -25.9 -25871 0.3 SCRT2 RBM22 SCRT1 POLR2A ZNF189 KLF17 GLIS1 KLF1 PML HSD3B7 VKORC1 ENSG00000275263 SETD1A
GH16J030977 Enhancer 0.5 ENCODE 0.4 -20.4 -20416 0.2 CTCF ZBTB33 RBFOX2 POLR2A RAD21 ZNF143 HSD3B7 ENSG00000275263 SETD1A
GH16J030967 Enhancer 0.3 dbSUPER 0.4 -10.7 -10679 0.8 NBN SETD1A ENSG00000275263 HSD3B7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000275263 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000275263 Gene

Genomic Locations for ENSG00000275263 Gene
chr16:30,956,872-30,957,199
(GRCh38/hg38)
Size:
328 bases
Orientation:
Minus strand

Genomic View for ENSG00000275263 Gene

Genes around ENSG00000275263 on UCSC Golden Path with GeneCards custom track
ENSG00000275263 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000275263 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000275263 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000275263 Gene

Proteins for ENSG00000275263 Gene

Post-translational modifications for ENSG00000275263 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000275263 Gene

Domains & Families for ENSG00000275263 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000275263 Gene

Function for ENSG00000275263 Gene

Phenotypes From GWAS Catalog for ENSG00000275263 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000275263 Gene

Localization for ENSG00000275263 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000275263 Gene

Pathways & Interactions for ENSG00000275263 Gene

PathCards logo

SuperPathways for ENSG00000275263 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000275263 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000275263 Gene

Drugs & Compounds for ENSG00000275263 Gene

No Compound Related Data Available

Transcripts for ENSG00000275263 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000275263 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000787A86_9606 lncRNA 328 2

Ensembl: ENST00000614997 (view in UCSC) ,

LNCipedia: lnc-STX1B-1:1,

ENSG00000275263 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000275263 Gene

No ASD Table

Relevant External Links for ENSG00000275263 Gene

GeneLoc Exon Structure for
ENSG00000275263

No data available for mRNA/cDNA for ENSG00000275263 Gene

Expression for ENSG00000275263 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000275263 Gene

Orthologs for ENSG00000275263 Gene

Evolution for ENSG00000275263 Gene

ENSEMBL:
Gene Tree for ENSG00000275263 (if available)
TreeFam:
Gene Tree for ENSG00000275263 (if available)

No data available for Orthologs for ENSG00000275263 Gene

Paralogs for ENSG00000275263 Gene

No data available for Paralogs for ENSG00000275263 Gene

Variants for ENSG00000275263 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000275263 Gene

Disorders for ENSG00000275263 Gene

No disorders were found for ENSG00000275263 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000275263 Gene

Publications for ENSG00000275263 Gene

No publications were found for ENSG00000275263 Gene.

No data available for Mastermind for ENSG00000275263 Gene

Products for ENSG00000275263 Gene

Sources for ENSG00000275263 Gene