Aliases for ENSG00000275219 Gene

Subcategory (RNA class) for ENSG00000275219 Gene

snRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000275219 Gene

  • AC024051.6 5
  • RF00004 168
  • 1A9N_Q 167
  • 5O9Z_2 167
  • 6ICZ_H 167
  • 5Z58_H 167
  • 6QDV_2 167
  • 1A9N_R 167
  • 6ID0_H 167
  • 6AHD_H 167
  • 6ID1_H 167
  • 5Z56_H 167
  • 5XJC_H 167
  • 6AH0_H 167
  • 6QX9_2 167
  • 5Z57_H 167
  • 5MQF_2 167
  • RNU2-1 2
  • 6FF4_2 167
  • 5YZG_H 167
  • 6FF7_2 167

External Ids for ENSG00000275219 Gene

Summaries for ENSG00000275219 Gene

GeneCards Summary for ENSG00000275219 Gene

ENSG00000275219 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for ENSG00000275219 Gene

Additional gene information for ENSG00000275219 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000275219 Gene

Genomics for ENSG00000275219 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000275219 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J043295 Promoter 0.3 Ensembl 600.7 -0.3 -286 3.4 AH003022-012 ENSG00000275219 MN297449-008 AH003022-013 MN297449-005 CCDC200 TMEM106A lnc-LINC00854-1-001
GH17J043296 Promoter 0.3 Ensembl 600.7 +1.7 1714 0.2 AH003022-012 ENSG00000275219 MN297449-008 ENSG00000274452 MN297449-007 MN297449-005 CCDC200 TMEM106A lnc-LINC00854-1-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000275219 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000275219 Gene

Genomic Locations for ENSG00000275219 Gene
chr17:43,296,425-43,296,615
(GRCh38/hg38)
Size:
191 bases
Orientation:
Minus strand

Genomic View for ENSG00000275219 Gene

Genes around ENSG00000275219 on UCSC Golden Path with GeneCards custom track
ENSG00000275219 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000275219 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000275219 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000275219 Gene

Proteins for ENSG00000275219 Gene

Post-translational modifications for ENSG00000275219 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000275219 Gene

Domains & Families for ENSG00000275219 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000275219 Gene

Function for ENSG00000275219 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000275219 Gene

Localization for ENSG00000275219 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000275219 Gene

Pathways & Interactions for ENSG00000275219 Gene

PathCards logo

SuperPathways for ENSG00000275219 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000275219 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000275219 Gene

Drugs & Compounds for ENSG00000275219 Gene

No Compound Related Data Available

Transcripts for ENSG00000275219 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000275219 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003EE995_9606 snRNA 188 4

HGNC: 10142,

RefSeq: NR_002716,

PDBe: 5MQF_2, 5O9Z_2, 5XJC_H, 5YZG_H, 5Z56_H,

ENA: K02227.1:192..379:ncRNA, K03022.1:214..401:ncRNA, K03023.1:557..744:ncRNA, U57614.1:4882..5069:ncRNA,

URS00006A3E7F_9606 snRNA 191 2

Ensembl: ENST00000611544 (view in UCSC) , ENST00000613119 (view in UCSC) , ENST00000613778 (view in UCSC) , ENST00000615427 (view in UCSC) , ENST00000616345 (view in UCSC) ,

Rfam: RF00004,

URS0000E60B66_9606 snRNA 188 1

PDBe: 6QX9_2,

URS000034A3BC_9606 snRNA 187 1

ENA: AH003022.2:1..187:ncRNA,

URS00002CBAC9_9606 snRNA 186 1

ENA: L37793.1:4586..4771:ncRNA,

ENSG00000275219 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000275219 Gene

No ASD Table

Relevant External Links for ENSG00000275219 Gene

GeneLoc Exon Structure for
ENSG00000275219

No data available for mRNA/cDNA for ENSG00000275219 Gene

Expression for ENSG00000275219 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000275219 Gene

Orthologs for ENSG00000275219 Gene

Evolution for ENSG00000275219 Gene

ENSEMBL:
Gene Tree for ENSG00000275219 (if available)
TreeFam:
Gene Tree for ENSG00000275219 (if available)

No data available for Orthologs for ENSG00000275219 Gene

Paralogs for ENSG00000275219 Gene

No data available for Paralogs for ENSG00000275219 Gene

Variants for ENSG00000275219 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000275219 Gene

Disorders for ENSG00000275219 Gene

No disorders were found for ENSG00000275219 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000275219 Gene

Publications for ENSG00000275219 Gene

No publications were found for ENSG00000275219 Gene.

No data available for Mastermind for ENSG00000275219 Gene

Products for ENSG00000275219 Gene

Sources for ENSG00000275219 Gene