Aliases for ENSG00000274979 Gene

Subcategory (RNA class) for ENSG00000274979 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000274979 Gene

  • Novel Transcript 5
  • Lnc-LRRC10-4 165
  • AC020656.2 5

External Ids for ENSG00000274979 Gene

Summaries for ENSG00000274979 Gene

GeneCards Summary for ENSG00000274979 Gene

ENSG00000274979 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000274979 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000274979 Gene

Genomics for ENSG00000274979 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000274979 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J069328 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.4 373 6.1 GATAD2A ATF7 TFE3 SOX13 IKZF1 FOXA1 PRDM1 ZIC2 RBFOX2 RXRB ENSG00000274979 piR-30188-045 piR-60246-043 LYZ NUP107 YEATS4 CNOT2 CPSF6 KRT8P39 CPM
GH12J069320 Enhancer 0.6 Ensembl dbSUPER 0.4 +9.5 9481 3.6 FOXA2 HNF4A KDM1A REST FOXA3 ZNF384 LYZ YEATS4 ENSG00000274979 ENSG00000257764 C1GALT1P1 CPSF6
GH12J069284 Promoter/Enhancer 1.1 Ensembl ENCODE 0.3 +47.6 47581 1 CTCF ETV6 MTA2 REST ZNF24 HDAC1 GABPA SOX6 ZNF561 NRF1 C1GALT1P1 lnc-CPSF6-2 LYZ CPSF6 ENSG00000274979 ENSG00000257764
GH12J069291 Enhancer 1 Ensembl ENCODE 0.3 +39.5 39481 3.6 GATAD2A CTCF ZNF512 JUND ZNF143 RXRB REST RAD21 TRIM22 ZNF561 LYZ YEATS4 C1GALT1P1 ENSG00000274979 CPSF6 ENSG00000257764
GH12J069294 Enhancer 0.3 Ensembl 0.3 +37.2 37181 0.6 MNT LYZ C1GALT1P1 ENSG00000274979 CPSF6 ENSG00000257764
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000274979 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000274979 Gene

Genomic Locations for ENSG00000274979 Gene
chr12:69,326,574-69,331,882
(GRCh38/hg38)
Size:
5,309 bases
Orientation:
Minus strand

Genomic View for ENSG00000274979 Gene

Genes around ENSG00000274979 on UCSC Golden Path with GeneCards custom track
ENSG00000274979 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000274979 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000274979 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000274979 Gene

Proteins for ENSG00000274979 Gene

Post-translational modifications for ENSG00000274979 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000274979 Gene

Domains & Families for ENSG00000274979 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000274979 Gene

Function for ENSG00000274979 Gene

Phenotypes From GWAS Catalog for ENSG00000274979 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000274979 Gene

Localization for ENSG00000274979 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000274979 Gene

Pathways & Interactions for ENSG00000274979 Gene

PathCards logo

SuperPathways for ENSG00000274979 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000274979 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000274979 Gene

Drugs & Compounds for ENSG00000274979 Gene

No Compound Related Data Available

Transcripts for ENSG00000274979 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000274979 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075F664_9606 lncRNA 5309 2

Ensembl: ENST00000613291 (view in UCSC) ,

LNCipedia: lnc-LRRC10-4:1,

ENSG00000274979 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000274979 Gene

No ASD Table

Relevant External Links for ENSG00000274979 Gene

GeneLoc Exon Structure for
ENSG00000274979

No data available for mRNA/cDNA for ENSG00000274979 Gene

Expression for ENSG00000274979 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000274979 Gene

Orthologs for ENSG00000274979 Gene

Evolution for ENSG00000274979 Gene

ENSEMBL:
Gene Tree for ENSG00000274979 (if available)
TreeFam:
Gene Tree for ENSG00000274979 (if available)

No data available for Orthologs for ENSG00000274979 Gene

Paralogs for ENSG00000274979 Gene

No data available for Paralogs for ENSG00000274979 Gene

Variants for ENSG00000274979 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000274979 Gene

Disorders for ENSG00000274979 Gene

Additional Disease Information for ENSG00000274979

No disorders were found for ENSG00000274979 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000274979 Gene

Publications for ENSG00000274979 Gene

No publications were found for ENSG00000274979 Gene.

No data available for Mastermind for ENSG00000274979 Gene

Products for ENSG00000274979 Gene

Sources for ENSG00000274979 Gene