Aliases for ENSG00000273951 Gene

Subcategory (RNA class) for ENSG00000273951 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000273951 Gene

  • Novel Transcript, Sense Intronic To CHD6 5
  • Lnc-EMILIN3-5 165
  • AL031667.3 5

External Ids for ENSG00000273951 Gene

Summaries for ENSG00000273951 Gene

GeneCards Summary for ENSG00000273951 Gene

ENSG00000273951 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000273951 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000273951 Gene

Genomics for ENSG00000273951 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000273951 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J041481 Enhancer 0.7 Ensembl ENCODE 0.7 +2.9 2924 3 PRDM1 SP1 JUND CEBPB RBM22 FOSL2 GATA3 MAFK CTCF ATF2 ENSG00000273951 lnc-EMILIN3-3 ENSG00000235088 EMILIN3 CHD6
GH20J041475 Enhancer 1 Ensembl ENCODE 0.4 +10.1 10124 2.2 CEBPG CREB1 ARID3A PRDM10 ZNF629 ZNF512 ZNF692 ZHX2 RFX1 ZIC2 EMILIN3 LPIN3 ENSG00000235088 ENSG00000273951 lnc-EMILIN3-3 CHD6
GH20J041498 Enhancer 0.9 ENCODE 0.4 -11.1 -11131 0.2 CEBPG GATAD2A SOX13 NFKBIZ RCOR2 FOXA1 RXRB IRF2 SP1 CEBPA ENSG00000273951 piR-60731-008 CHD6 EMILIN3
GH20J041497 Enhancer 0.9 ENCODE 0.4 -11.8 -11780 1.1 CEBPG GATAD2A SOX13 NFKBIZ RCOR2 FOXA1 RXRB IRF2 CEBPA FOXK2 ENSG00000273951 piR-60731-008 CHD6 EMILIN3
GH20J041509 Enhancer 0.9 Ensembl ENCODE 0.4 -23.8 -23776 4.4 GATAD2A ZNF24 POLR2A ZNF600 CEBPA CEBPB FOXA2 ZNF316 MAFF YY1 piR-60731-008 ENSG00000273951 CHD6 EMILIN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000273951 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000273951 Gene

Genomic Locations for ENSG00000273951 Gene
chr20:41,485,571-41,486,225
(GRCh38/hg38)
Size:
655 bases
Orientation:
Minus strand

Genomic View for ENSG00000273951 Gene

Genes around ENSG00000273951 on UCSC Golden Path with GeneCards custom track
ENSG00000273951 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000273951 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000273951 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000273951 Gene

Proteins for ENSG00000273951 Gene

Post-translational modifications for ENSG00000273951 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000273951 Gene

Domains & Families for ENSG00000273951 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000273951 Gene

Function for ENSG00000273951 Gene

Phenotypes From GWAS Catalog for ENSG00000273951 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000273951 Gene

Localization for ENSG00000273951 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000273951 Gene

Pathways & Interactions for ENSG00000273951 Gene

PathCards logo

SuperPathways for ENSG00000273951 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000273951 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000273951 Gene

Drugs & Compounds for ENSG00000273951 Gene

No Compound Related Data Available

Transcripts for ENSG00000273951 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000273951 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000768C52_9606 lncRNA 655 2

Ensembl: ENST00000620124 (view in UCSC) ,

LNCipedia: lnc-EMILIN3-5:1,

ENSG00000273951 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000273951 Gene

No ASD Table

Relevant External Links for ENSG00000273951 Gene

GeneLoc Exon Structure for
ENSG00000273951

No data available for mRNA/cDNA for ENSG00000273951 Gene

Expression for ENSG00000273951 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000273951 Gene

Orthologs for ENSG00000273951 Gene

Evolution for ENSG00000273951 Gene

ENSEMBL:
Gene Tree for ENSG00000273951 (if available)
TreeFam:
Gene Tree for ENSG00000273951 (if available)

No data available for Orthologs for ENSG00000273951 Gene

Paralogs for ENSG00000273951 Gene

No data available for Paralogs for ENSG00000273951 Gene

Variants for ENSG00000273951 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000273951 Gene

Disorders for ENSG00000273951 Gene

No disorders were found for ENSG00000273951 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000273951 Gene

Publications for ENSG00000273951 Gene

No publications were found for ENSG00000273951 Gene.

No data available for Mastermind for ENSG00000273951 Gene

Products for ENSG00000273951 Gene

Sources for ENSG00000273951 Gene