Aliases for ENSG00000273449 Gene

Subcategory (RNA class) for ENSG00000273449 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for ENSG00000273449 Gene

  • Novel Transcript 5
  • Lnc-TMA16-1 168
  • AC093788.1 5

External Ids for ENSG00000273449 Gene

Previous GeneCards Identifiers for ENSG00000273449 Gene

  • GC04P164450

Summaries for ENSG00000273449 Gene

GeneCards Summary for ENSG00000273449 Gene

ENSG00000273449 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000273449 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000273449 Gene

Genomics for ENSG00000273449 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000273449 Gene

Promoters and enhancers for ENSG00000273449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J163528 Enhancer 0.3 dbSUPER 500.7 -0.8 -783 1.9 RBM22 ENSG00000273449 MARCHF1 TKTL2 TMA16 HSALNG0038298
GH04J163493 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 8.9 -34.9 -34940 3.5 RXRA FOXK2 ZBTB40 ZNF217 SIN3A TCF12 MYC USF1 POLR2G SP1 TMA16 MARCHF1 ENSG00000273449 TKTL2 HSALNG0038297
GH04J163550 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 +20.7 20661 0.2 CTCF USF1 REST USF2 TOE1 RAD21 TRIM22 RAD51 SMC3 ZNF384 TMA16 TKTL2 ENSG00000273449 RF01061-134 MARCHF1
GH04J163544 Enhancer 0.9 ENCODE dbSUPER 0.4 +15.2 15172 1.4 CTCF NRF1 REST RAD21 MYC TRIM22 SMC3 NBN POU2F2 ZNF654 MARCHF1 TMA16 TKTL2 ENSG00000273449 RF01061-134
GH04J163610 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +81.7 81730 5.8 EP300 SPI1 BATF IRF4 ATF2 JUNB NFIC CTCF POLR2A RUNX3 MARCHF1 TMA16 RF01061-134 ENSG00000273449 lnc-TKTL2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000273449 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000273449 Gene

Genomic Locations for ENSG00000273449 Gene
chr4:163,529,771-163,530,697
(GRCh38/hg38)
Size:
927 bases
Orientation:
Plus strand
chr4:164,450,923-164,451,849
(GRCh37/hg19)
Size:
927 bases
Orientation:
Plus strand

Genomic View for ENSG00000273449 Gene

Genes around ENSG00000273449 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000273449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000273449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000273449 Gene

Proteins for ENSG00000273449 Gene

Post-translational modifications for ENSG00000273449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000273449 Gene

Domains & Families for ENSG00000273449 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000273449 Gene

Function for ENSG00000273449 Gene

Phenotypes From GWAS Catalog for ENSG00000273449 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000273449 Gene

Localization for ENSG00000273449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000273449 Gene

Pathways & Interactions for ENSG00000273449 Gene

PathCards logo

SuperPathways for ENSG00000273449 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000273449 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000273449 Gene

Drugs & Compounds for ENSG00000273449 Gene

No Compound Related Data Available

Transcripts for ENSG00000273449 Gene

mRNA/cDNA for ENSG00000273449 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000273449 Gene

No ASD Table

Relevant External Links for ENSG00000273449 Gene

GeneLoc Exon Structure for
ENSG00000273449

Expression for ENSG00000273449 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000273449 Gene

Orthologs for ENSG00000273449 Gene

Evolution for ENSG00000273449 Gene

ENSEMBL:
Gene Tree for ENSG00000273449 (if available)
TreeFam:
Gene Tree for ENSG00000273449 (if available)

No data available for Orthologs for ENSG00000273449 Gene

Paralogs for ENSG00000273449 Gene

No data available for Paralogs for ENSG00000273449 Gene

Variants for ENSG00000273449 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000273449 Gene

Disorders for ENSG00000273449 Gene

No disorders were found for ENSG00000273449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000273449 Gene

Publications for ENSG00000273449 Gene

No publications were found for ENSG00000273449 Gene.

No data available for Mastermind for ENSG00000273449 Gene

Products for ENSG00000273449 Gene

Sources for ENSG00000273449 Gene