Aliases for ENSG00000273449 Gene

Subcategory (RNA class) for ENSG00000273449 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000273449 Gene

  • Novel Transcript 5
  • Lnc-TMA16-1 165
  • AC093788.1 5

External Ids for ENSG00000273449 Gene

Previous GeneCards Identifiers for ENSG00000273449 Gene

  • GC04P164450

Summaries for ENSG00000273449 Gene

GeneCards Summary for ENSG00000273449 Gene

ENSG00000273449 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000273449 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000273449 Gene

Genomics for ENSG00000273449 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000273449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J163528 Enhancer 0.3 dbSUPER 600.7 -0.8 -783 1.9 RBM22 ENSG00000273449 MARCHF1 TKTL2 TMA16 MN298146 ANP32C
GH04J163493 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 8.9 -34.9 -34940 3.5 SP1 HNRNPL CREB1 GATAD2A ZNF629 TFE3 ZNF512 SIX5 IKZF1 NFKBIZ TMA16 MARCHF1 ENSG00000273449 TKTL2 HSALNG0038297 ANP32C
GH04J163550 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 +20.7 20661 0.2 CTCF REST RAD21 TRIM22 GTF2F1 YY1 TOE1 CBX3 USF2 RUNX3 TMA16 TKTL2 ENSG00000273449 LOC107986325 ANP32C MARCHF1
GH04J163544 Enhancer 0.8 ENCODE dbSUPER 0.4 +15.2 15172 1.4 CTCF ZNF143 REST RAD21 TRIM22 NRF1 RUNX3 FOXK2 ZNF444 SMC3 MARCHF1 TMA16 TKTL2 ENSG00000273449 LOC107986325 ANP32C
GH04J163610 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +81.7 81730 5.8 RUNX3 JUNB SPI1 IRF4 BATF ATF2 CTCF MARCHF1 TMA16 LOC107986325 ENSG00000273449 ANP32C lnc-TKTL2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000273449 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000273449 Gene

Genomic Locations for ENSG00000273449 Gene
chr4:163,529,771-163,530,697
(GRCh38/hg38)
Size:
927 bases
Orientation:
Plus strand
chr4:164,450,923-164,451,849
(GRCh37/hg19)
Size:
927 bases
Orientation:
Plus strand

Genomic View for ENSG00000273449 Gene

Genes around ENSG00000273449 on UCSC Golden Path with GeneCards custom track
ENSG00000273449 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000273449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000273449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000273449 Gene

Proteins for ENSG00000273449 Gene

Post-translational modifications for ENSG00000273449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000273449 Gene

Domains & Families for ENSG00000273449 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000273449 Gene

Function for ENSG00000273449 Gene

Phenotypes From GWAS Catalog for ENSG00000273449 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000273449 Gene

Localization for ENSG00000273449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000273449 Gene

Pathways & Interactions for ENSG00000273449 Gene

PathCards logo

SuperPathways for ENSG00000273449 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000273449 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000273449 Gene

Drugs & Compounds for ENSG00000273449 Gene

No Compound Related Data Available

Transcripts for ENSG00000273449 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000273449 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005C9446_9606 lncRNA 927 2

Ensembl: ENST00000609356 (view in UCSC) ,

LNCipedia: lnc-TMA16-1:1,

ENSG00000273449 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000273449 Gene

No ASD Table

Relevant External Links for ENSG00000273449 Gene

GeneLoc Exon Structure for
ENSG00000273449

No data available for mRNA/cDNA for ENSG00000273449 Gene

Expression for ENSG00000273449 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000273449 Gene

Orthologs for ENSG00000273449 Gene

Evolution for ENSG00000273449 Gene

ENSEMBL:
Gene Tree for ENSG00000273449 (if available)
TreeFam:
Gene Tree for ENSG00000273449 (if available)

No data available for Orthologs for ENSG00000273449 Gene

Paralogs for ENSG00000273449 Gene

No data available for Paralogs for ENSG00000273449 Gene

Variants for ENSG00000273449 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000273449 Gene

Disorders for ENSG00000273449 Gene

Additional Disease Information for ENSG00000273449

No disorders were found for ENSG00000273449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000273449 Gene

Publications for ENSG00000273449 Gene

No publications were found for ENSG00000273449 Gene.

No data available for Mastermind for ENSG00000273449 Gene

Products for ENSG00000273449 Gene

Sources for ENSG00000273449 Gene