Aliases for ENSG00000273143 Gene

Subcategory (RNA class) for ENSG00000273143 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000273143 Gene

  • Novel Transcript 5
  • NONHSAG006854.2 91
  • HSALNG0080580 164
  • Lnc-SMNDC1-2 165
  • AL355512.1 5

External Ids for ENSG00000273143 Gene

Previous GeneCards Identifiers for ENSG00000273143 Gene

  • GC10M112189

Summaries for ENSG00000273143 Gene

GeneCards Summary for ENSG00000273143 Gene

ENSG00000273143 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000273143 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000273143 Gene

Genomics for ENSG00000273143 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000273143 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J110446 Enhancer 1.1 Ensembl ENCODE dbSUPER 6.3 +50.3 50297 2 IKZF1 REST DPF2 HDAC1 ZFX EP300 HMBOX1 JUND CTCF CEBPB LOC105378482 DUSP5 ENSG00000273143 HSALNG0080579 SMNDC1
GH10J110441 Enhancer 1.1 Ensembl ENCODE dbSUPER 4.9 +55.8 55805 1.4 PRDM10 LEF1 POLR2A JUND PKNOX1 HDAC1 NONO ELK1 RELB CTBP1 DUSP5 ENSG00000273143 LOC105378482 HSALNG0080579 SMNDC1
GH10J110366 Enhancer 0.9 Ensembl ENCODE 4.9 +129.8 129768 3.3 PRDM10 IKZF1 JUND RELA IKZF2 EED UBTF RELB RUNX3 FOSL1 DUSP5 ENSG00000273143 MXI1 piR-46134-003 hsa-miR-5095-054 SMNDC1
GH10J110433 Enhancer 0.5 dbSUPER 5.1 +63.9 63857 0.9 FOXA1 ZIC2 ESR1 GATA3 ZFX DUSP5 ENSG00000273143 LOC105378482 HSALNG0080579 SMNDC1
GH10J110495 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.1 -3134 10.9 SP1 CREB1 TEAD4 PRDM10 ZNF629 LEF1 IKZF1 KDM1A ZNF692 POLR2A DUSP5 SMC3 XPNPEP1 MXI1 BBIP1 SHOC2 PDCD4 ENSG00000273143 lnc-SMNDC1-3 RF00017-801
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000273143 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000273143 Gene

Genomic Locations for ENSG00000273143 Gene
chr10:110,416,831-110,497,706
(GRCh38/hg38)
Size:
80,876 bases
Orientation:
Minus strand
chr10:112,188,598-112,255,962
(GRCh37/hg19)
Size:
67,365 bases
Orientation:
Minus strand

Genomic View for ENSG00000273143 Gene

Genes around ENSG00000273143 on UCSC Golden Path with GeneCards custom track
ENSG00000273143 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000273143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000273143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000273143 Gene

Proteins for ENSG00000273143 Gene

Post-translational modifications for ENSG00000273143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000273143 Gene

Domains & Families for ENSG00000273143 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000273143 Gene

Function for ENSG00000273143 Gene

Phenotypes From GWAS Catalog for ENSG00000273143 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000273143 Gene

Localization for ENSG00000273143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000273143 Gene

Pathways & Interactions for ENSG00000273143 Gene

PathCards logo

SuperPathways for ENSG00000273143 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000273143 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000273143 Gene

Drugs & Compounds for ENSG00000273143 Gene

No Compound Related Data Available

Transcripts for ENSG00000273143 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000273143 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000C94B2_9606 lncRNA 209 3

Ensembl: ENST00000607952 (view in UCSC) ,

LNCipedia: lnc-SMNDC1-2:2,

NONCODE: NONHSAT157499.1,

URS000049B6C7_9606 lncRNA 488 2

Ensembl: ENST00000609514 (view in UCSC) ,

LNCipedia: lnc-SMNDC1-2:3,

URS0000EF394A_9606 lncRNA 3011 1

Ensembl: ENST00000666621 (view in UCSC) ,

URS0000D5925E_9606 lncRNA 2016 2

LncBook: HSALNT0168062,

LNCipedia: lnc-SMNDC1-2:13,

URS0000D58751_9606 lncRNA 1686 2

LncBook: HSALNT0168063,

LNCipedia: lnc-SMNDC1-2:14,

ENSG00000273143 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000273143 Gene

No ASD Table

Relevant External Links for ENSG00000273143 Gene

GeneLoc Exon Structure for
ENSG00000273143

No data available for mRNA/cDNA for ENSG00000273143 Gene

Expression for ENSG00000273143 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000273143 Gene

Orthologs for ENSG00000273143 Gene

Evolution for ENSG00000273143 Gene

ENSEMBL:
Gene Tree for ENSG00000273143 (if available)
TreeFam:
Gene Tree for ENSG00000273143 (if available)

No data available for Orthologs for ENSG00000273143 Gene

Paralogs for ENSG00000273143 Gene

No data available for Paralogs for ENSG00000273143 Gene

Variants for ENSG00000273143 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000273143 Gene

Disorders for ENSG00000273143 Gene

Additional Disease Information for ENSG00000273143

No disorders were found for ENSG00000273143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000273143 Gene

Publications for ENSG00000273143 Gene

No publications were found for ENSG00000273143 Gene.

No data available for Mastermind for ENSG00000273143 Gene

Products for ENSG00000273143 Gene

Sources for ENSG00000273143 Gene