Aliases for ENSG00000273091 Gene

Subcategory (RNA class) for ENSG00000273091 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000273091 Gene

  • Novel Transcript 5
  • HSALNG0132637 164
  • AP000255.1 5
  • Lnc-SOD1-9 165

External Ids for ENSG00000273091 Gene

Previous GeneCards Identifiers for ENSG00000273091 Gene

  • GC21P033108

Summaries for ENSG00000273091 Gene

GeneCards Summary for ENSG00000273091 Gene

ENSG00000273091 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000273091 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000273091 Gene

Genomics for ENSG00000273091 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000273091 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J031730 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 600.7 -0.6 -583 5 ARHGAP35 HNRNPL GATAD2A PRDM10 IKZF1 ZNF692 POLR2A BACH1 JUND FOXA1 SCAF4 AB372660-004 ENSG00000273091 MIS18A URB1 CFAP298 ENSG00000238390 EVA1C SOD1
GH21J031335 Enhancer 0.7 Ensembl ENCODE 11.3 -395.1 -395122 3.5 PRDM10 JUND ZNF157 CTBP1 FOS ZNF217 ZNF184 BHLHE40 SMARCE1 FOSL2 ENSG00000273091 TIAM1 ENSG00000286643 lnc-SOD1-11 LOC150051 KRTAP19-8
GH21J031592 Enhancer 0.5 Ensembl 6.8 -139.2 -139170 1 RFX1 ZNF692 SP1 ZFP69B HNF4A RXRA HNF4G ZBTB6 lnc-SOD1-2 ENSG00000273091 EXOSC3P1 LOC107985488 TIAM1 SOD1
GH21J031734 Promoter/Enhancer 1.2 Ensembl ENCODE 0.7 +3.0 2981 1.6 LEF1 IKZF1 DDX20 MTA2 ZNF24 DPF2 SOX6 TCF12 EP300 CBX3 ENSG00000273091 SCAF4 piR-61945-320 HUNK
GH21J031737 Enhancer 0.7 ENCODE 0.4 +5.5 5492 0.2 IKZF1 PRDM1 PKNOX1 ZNF24 GATAD2B CEBPB CTBP1 TAF9B NFE2 MYC piR-61945-320 ENSG00000273091 SCAF4 HUNK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000273091 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000273091 Gene

Genomic Locations for ENSG00000273091 Gene
chr21:31,732,271-31,748,634
(GRCh38/hg38)
Size:
16,364 bases
Orientation:
Plus strand
chr21:33,108,045-33,108,720
(GRCh37/hg19)
Size:
676 bases
Orientation:
Plus strand

Genomic View for ENSG00000273091 Gene

Genes around ENSG00000273091 on UCSC Golden Path with GeneCards custom track
ENSG00000273091 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000273091 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000273091 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000273091 Gene

Proteins for ENSG00000273091 Gene

Post-translational modifications for ENSG00000273091 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000273091 Gene

Domains & Families for ENSG00000273091 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000273091 Gene

Function for ENSG00000273091 Gene

Phenotypes From GWAS Catalog for ENSG00000273091 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000273091 Gene

Localization for ENSG00000273091 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000273091 Gene

Pathways & Interactions for ENSG00000273091 Gene

PathCards logo

SuperPathways for ENSG00000273091 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000273091 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000273091 Gene

Drugs & Compounds for ENSG00000273091 Gene

No Compound Related Data Available

Transcripts for ENSG00000273091 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000273091 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000053399_9606 lncRNA 676 3

Ensembl: ENST00000610276 (view in UCSC) ,

LncBook: HSALNT0272677,

LNCipedia: lnc-SOD1-9:1,

URS0000D59C7E_9606 lncRNA 16364 1

LNCipedia: lnc-SOD1-9:4,

URS0000D5AE8B_9606 lncRNA 5167 1

LNCipedia: lnc-SOD1-9:3,

URS0000D5C925_9606 lncRNA 4697 1

LNCipedia: lnc-SOD1-9:6,

URS0000D5B325_9606 lncRNA 2451 1

LNCipedia: lnc-SOD1-9:2,

ENSG00000273091 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000273091 Gene

No ASD Table

Relevant External Links for ENSG00000273091 Gene

GeneLoc Exon Structure for
ENSG00000273091

No data available for mRNA/cDNA for ENSG00000273091 Gene

Expression for ENSG00000273091 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000273091 Gene

Orthologs for ENSG00000273091 Gene

Evolution for ENSG00000273091 Gene

ENSEMBL:
Gene Tree for ENSG00000273091 (if available)
TreeFam:
Gene Tree for ENSG00000273091 (if available)

No data available for Orthologs for ENSG00000273091 Gene

Paralogs for ENSG00000273091 Gene

No data available for Paralogs for ENSG00000273091 Gene

Variants for ENSG00000273091 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000273091 Gene

Disorders for ENSG00000273091 Gene

Additional Disease Information for ENSG00000273091

No disorders were found for ENSG00000273091 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000273091 Gene

Publications for ENSG00000273091 Gene

No publications were found for ENSG00000273091 Gene.

No data available for Mastermind for ENSG00000273091 Gene

Products for ENSG00000273091 Gene

Sources for ENSG00000273091 Gene