Aliases for ENSG00000273038 Gene

Subcategory (RNA class) for ENSG00000273038 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for ENSG00000273038 Gene

  • Novel Transcript 5
  • Lnc-ITGB1-1 168
  • AL365203.2 5

External Ids for ENSG00000273038 Gene

Previous GeneCards Identifiers for ENSG00000273038 Gene

  • GC10M033176

Summaries for ENSG00000273038 Gene

GeneCards Summary for ENSG00000273038 Gene

ENSG00000273038 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000273038 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000273038 Gene

Genomics for ENSG00000273038 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000273038 Gene

Promoters and enhancers for ENSG00000273038 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J032890 Enhancer 0.3 Ensembl 520.2 -1.2 -1190 0.6 IRF1 ENSG00000273038 piR-30350-010 LOC105376486
GH10J032947 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 22.9 -66.2 -66246 17.1 HNRNPK ZNF217 EP300 ZSCAN5C TCF12 NRF1 USF1 POLR2G NCOR1 GTF2E2 ITGB1 KIF5B EPC1 ENSG00000226842 ENSG00000273038 AK3P5 RPS4XP11 CCDC7 ITGB1-DT lnc-NRP1-2
GH10J032937 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 25.9 -50.4 -50426 5.1 EP300 ZSCAN5C TCF12 SAP30 TGIF2 TAF9B MXI1 ZNF341 SIN3A ZNF316 lnc-CCDC7-8 ENSG00000273038 CCDC7 lnc-NRP1-6 ITGB1
GH10J032445 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 16.2 +442.7 442741 3.1 HNRNPK ZBTB40 EP300 CTCF TCF12 SIN3A NRF1 POLR2G GTF2E2 PHF8 CCDC7 ENSG00000286409 LOC101929431 ENSG00000273038 EPC1 ITGB1 lnc-EPC1-4
GH10J032970 Enhancer 1.2 Ensembl ENCODE dbSUPER 18.6 -82.9 -82890 3.2 TCF12 NCOR1 JUND FOS TCF7 CTBP1 HINFP LEF1 NFRKB MBD2 ENSG00000273038 CCDC7 RPS4XP11 ITGB1-DT lnc-NRP1-2 piR-57460-051 ITGB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000273038 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000273038 Gene

Genomic Locations for ENSG00000273038 Gene
chr10:32,887,255-32,889,311
(GRCh38/hg38)
Size:
2,057 bases
Orientation:
Minus strand
chr10:33,176,189-33,178,239
(GRCh37/hg19)
Size:
2,051 bases
Orientation:
Minus strand

Genomic View for ENSG00000273038 Gene

Genes around ENSG00000273038 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000273038 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000273038 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000273038 Gene

Proteins for ENSG00000273038 Gene

Post-translational modifications for ENSG00000273038 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000273038 Gene

Domains & Families for ENSG00000273038 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000273038 Gene

Function for ENSG00000273038 Gene

Phenotypes From GWAS Catalog for ENSG00000273038 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000273038 Gene

Localization for ENSG00000273038 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000273038 Gene

Pathways & Interactions for ENSG00000273038 Gene

PathCards logo

SuperPathways for ENSG00000273038 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000273038 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000273038 Gene

Drugs & Compounds for ENSG00000273038 Gene

No Compound Related Data Available

Transcripts for ENSG00000273038 Gene

mRNA/cDNA for ENSG00000273038 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000273038 Gene

No ASD Table

Relevant External Links for ENSG00000273038 Gene

GeneLoc Exon Structure for
ENSG00000273038

Expression for ENSG00000273038 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000273038 Gene

Orthologs for ENSG00000273038 Gene

Evolution for ENSG00000273038 Gene

ENSEMBL:
Gene Tree for ENSG00000273038 (if available)
TreeFam:
Gene Tree for ENSG00000273038 (if available)

No data available for Orthologs for ENSG00000273038 Gene

Paralogs for ENSG00000273038 Gene

No data available for Paralogs for ENSG00000273038 Gene

Variants for ENSG00000273038 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000273038 Gene

Disorders for ENSG00000273038 Gene

No disorders were found for ENSG00000273038 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000273038 Gene

Publications for ENSG00000273038 Gene

No publications were found for ENSG00000273038 Gene.

No data available for Mastermind for ENSG00000273038 Gene

Products for ENSG00000273038 Gene

Sources for ENSG00000273038 Gene