Aliases for ENSG00000272988 Gene

Data sources for ENSG00000272988 Gene:

RNA type for ENSG00000272988 Gene

lncRNA

Aliases for ENSG00000272988 Gene

External Ids for ENSG00000272988 Gene

Previous GeneCards Identifiers for ENSG00000272988 Gene

  • GC10M073813

Summaries for ENSG00000272988 Gene

GeneCards Summary for ENSG00000272988 Gene

ENSG00000272988 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272988 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272988 Gene

Genomics for ENSG00000272988 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272988 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J072054 Enhancer 0.6 Ensembl 250.7 -1.2 -1164 0.4 ZNF585B EBF1 SMARCA5 ELF1 IKZF1 ZNF217 IKZF2 NBN DPF2 RELB ENSG00000272988 HSALNG0078756 SPOCK2 lnc-CHST3-1 CHST3
GH10J072056 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -2.9 -2864 1.8 CHD4 MXD4 KLF11 HOMEZ THAP11 FOXA2 KDM6A SMAD4 ZNF511 SAP130 SPOCK2 CDH23 ENSG00000272988 HSALNG0078756 lnc-CHST3-1 CHST3
GH10J072058 Enhancer 0.9 Ensembl dbSUPER 0.4 -5.5 -5464 1.4 ZNF600 ZIC2 FEZF1 EBF1 PRDM6 INSM2 NR2F1 ZBTB40 ZNF398 SP7 SPOCK2 ASCC1 lnc-CHST3-1 ENSG00000272988 CHST3
GH10J072061 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -7.1 -7140 1.2 ZNF600 REST CTCF SMC3 RAD21 ZNF143 GLIS1 PRDM4 SOX6 ZBTB11 lnc-CHST3-1 SPOCK2 CHST3 ENSG00000272988
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272988 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272988 Gene

Latest Assembly
chr10:72,053,293-72,054,037
(GRCh38/hg38)
Size:
745 bases
Orientation:
Minus strand

Previous Assembly
chr10:73,813,052-73,813,795
(GRCh37/hg19 by Ensembl)
Size:
744 bases
Orientation:
Minus strand

Genomic View for ENSG00000272988 Gene

Genes around ENSG00000272988 on UCSC Golden Path with GeneCards custom track
ENSG00000272988 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272988 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272988 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272988 Gene

Proteins for ENSG00000272988 Gene

Post-translational modifications for ENSG00000272988 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272988 Gene

Domains & Families for ENSG00000272988 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272988 Gene

Function for ENSG00000272988 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272988 Gene

Localization for ENSG00000272988 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272988 Gene

Pathways & Interactions for ENSG00000272988 Gene

PathCards logo

SuperPathways for ENSG00000272988 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272988 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272988 Gene

Drugs & Compounds for ENSG00000272988 Gene

No Compound Related Data Available

Transcripts for ENSG00000272988 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272988 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003CF64D_9606 lncRNA 744 2

Ensembl: ENST00000609403 (view in UCSC) ,

LNCipedia: lnc-SPOCK2-3:1,

URS0001BCEC09_9606 lncRNA 744 1

LncBook: HSALNT0164196,

ENSG00000272988 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272988 Gene

No ASD Table

Relevant External Links for ENSG00000272988 Gene

GeneLoc Exon Structure for
ENSG00000272988

No data available for mRNA/cDNA for ENSG00000272988 Gene

Expression for ENSG00000272988 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272988 Gene

Orthologs for ENSG00000272988 Gene

Evolution for ENSG00000272988 Gene

ENSEMBL:
Gene Tree for ENSG00000272988 (if available)
TreeFam:
Gene Tree for ENSG00000272988 (if available)

No data available for Orthologs for ENSG00000272988 Gene

Paralogs for ENSG00000272988 Gene

No data available for Paralogs for ENSG00000272988 Gene

Variants for ENSG00000272988 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272988 Gene

Disorders for ENSG00000272988 Gene

Additional Disease Information for ENSG00000272988

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000272988 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000272988 Gene

Publications for ENSG00000272988 Gene

No publications were found for ENSG00000272988 Gene.

No data available for Mastermind for ENSG00000272988 Gene

Products for ENSG00000272988 Gene

Sources for ENSG00000272988 Gene