Aliases for ENSG00000272973 Gene

Subcategory (RNA class) for ENSG00000272973 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000272973 Gene

  • Novel Transcript, Antisense To SLC2A11 5
  • Lnc-DERL3-2 165
  • AP000350.5 5

External Ids for ENSG00000272973 Gene

Additional External Ids for ENSG00000272973 Gene

Previous GeneCards Identifiers for ENSG00000272973 Gene

  • GC22M024198

Summaries for ENSG00000272973 Gene

GeneCards Summary for ENSG00000272973 Gene

ENSG00000272973 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272973 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272973 Gene

Genomics for ENSG00000272973 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272973 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J023856 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.9 -850 3 HNRNPL GATAD2A TFE3 IKZF1 CTCF POLR2A LARP7 ZNF143 RBFOX2 RXRB SLC2A11 ENSG00000272973 lnc-SMARCB1-1 piR-31432-442 piR-46662-431 piR-53431-445 piR-56759-368 piR-54764-415 SPECC1L ENSG00000251357
GH22J024008 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 28.1 -153.8 -153770 5.6 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 RFX1 LEF1 SOX13 RFX5 CABIN1 ENSG00000272973 ZDHHC8P1 MIF-AS1 SNRPD3 SUSD2 RN7SL268P GNAZ ZNF70 GSTT2
GH22J024548 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 24.6 -696.4 -696423 8.9 SP1 HNRNPL GATAD2A ATF7 PRDM10 REST ZNF629 TFE3 SIX5 LEF1 SNRPD3 GUCD1 GGT1 ENSG00000272973 SGSM1 UPB1 ADORA2A SLC2A11 ENSG00000228923 SMARCB1
GH22J024242 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 20 -388.2 -388248 6.2 HNRNPL GATAD2A CTCF ATF7 TARDBP LARP7 ZNF143 ZIC2 ZNF776 ZSCAN4 GGT5 ENSG00000272578 POM121L9P ENSG00000272973 SPECC1L RN7SL268P SUSD2 BCRP3 ZNF70 ENSG00000232545
GH22J023892 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 14.7 -38.2 -38150 4.7 HNRNPL CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 RFX1 IKZF1 ZNF692 MIF piR-30196 piR-30511 piR-30523 piR-30613 piR-36536 piR-37050 piR-37595 piR-31729 piR-34587
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272973 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272973 Gene

Genomic Locations for ENSG00000272973 Gene
chr22:23,856,427-23,857,039
(GRCh38/hg38)
Size:
613 bases
Orientation:
Minus strand
chr22:24,198,614-24,199,226
(GRCh37/hg19)
Size:
613 bases
Orientation:
Minus strand

Genomic View for ENSG00000272973 Gene

Genes around ENSG00000272973 on UCSC Golden Path with GeneCards custom track
ENSG00000272973 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272973 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272973 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272973 Gene

Proteins for ENSG00000272973 Gene

Post-translational modifications for ENSG00000272973 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272973 Gene

Domains & Families for ENSG00000272973 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272973 Gene

Function for ENSG00000272973 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272973 Gene

Localization for ENSG00000272973 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272973 Gene

Pathways & Interactions for ENSG00000272973 Gene

PathCards logo

SuperPathways for ENSG00000272973 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272973 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272973 Gene

Drugs & Compounds for ENSG00000272973 Gene

No Compound Related Data Available

Transcripts for ENSG00000272973 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272973 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000A8CC3_9606 lncRNA 613 2

Ensembl: ENST00000609825 (view in UCSC) , ENST00000626452 (view in UCSC) ,

LNCipedia: lnc-DERL3-2:1,

ENSG00000272973 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272973 Gene

No ASD Table

Relevant External Links for ENSG00000272973 Gene

GeneLoc Exon Structure for
ENSG00000272973

No data available for mRNA/cDNA for ENSG00000272973 Gene

Expression for ENSG00000272973 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272973 Gene

Orthologs for ENSG00000272973 Gene

Evolution for ENSG00000272973 Gene

ENSEMBL:
Gene Tree for ENSG00000272973 (if available)
TreeFam:
Gene Tree for ENSG00000272973 (if available)

No data available for Orthologs for ENSG00000272973 Gene

Paralogs for ENSG00000272973 Gene

No data available for Paralogs for ENSG00000272973 Gene

Variants for ENSG00000272973 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272973 Gene

Disorders for ENSG00000272973 Gene

No disorders were found for ENSG00000272973 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272973 Gene

Publications for ENSG00000272973 Gene

No publications were found for ENSG00000272973 Gene.

No data available for Mastermind for ENSG00000272973 Gene

Products for ENSG00000272973 Gene

Sources for ENSG00000272973 Gene