Aliases for ENSG00000272958 Gene

Subcategory (RNA class) for ENSG00000272958 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000272958 Gene

  • Novel Transcript 5
  • Lnc-SMIM11A-3 165
  • AP000322.1 5

External Ids for ENSG00000272958 Gene

Previous GeneCards Identifiers for ENSG00000272958 Gene

  • GC21P035798

Summaries for ENSG00000272958 Gene

GeneCards Summary for ENSG00000272958 Gene

ENSG00000272958 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272958 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272958 Gene

Genomics for ENSG00000272958 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272958 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J034423 Promoter 0.7 EPDnew 600.7 -1.6 -1572 0.1 PRDM10 ZNF692 ZBTB44 TSHZ1 OSR2 ZBTB11 TRIM28 GFI1B ZSCAN21 ZEB2 ENSG00000272958 SMIM34A ENSG00000273104 LOC105372793 FAM243A MN298114-130
GH21J034521 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5 +99.0 99041 8.5 CREB1 GATAD2A ATF7 TEAD4 PRDM10 REST ZNF629 TFE3 SOX13 IKZF1 KCNE1 RCAN1 CLIC6 ENSG00000272958 SMIM34A lnc-RCAN1-1 lnc-KCNE1-1 MN298114-130
GH21J034517 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 5.1 +92.5 92508 0.8 CTCF RAD21 ELF1 SPI1 GABPA ZNF143 POLR2A MYC SMC3 ENSG00000272958 RCAN1 lnc-RCAN1-1 KCNE1 MN298114-130
GH21J034429 Enhancer 0.7 ENCODE 0.7 +4.4 4390 0.2 CTCF PRDM10 ZIC2 REST RAD21 ZNF600 SCRT2 ZNF639 SMC3 ZBTB17 ENSG00000272958 SMIM34A HSALNG0132850 KCNE1 MN298114-130
GH21J034443 Enhancer 0.6 ENCODE 0.4 +18.2 18210 0.2 CEBPG CTCF ZNF143 REST RAD21 TRIM22 CEBPA CEBPB SMC3 GTF2F1 HSALNG0132850 RCAN1 FAM243A KCNE1 ENSG00000272958 SMIM34A MN298114-130
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272958 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272958 Gene

Genomic Locations for ENSG00000272958 Gene
chr21:34,425,508-34,426,017
(GRCh38/hg38)
Size:
510 bases
Orientation:
Plus strand
chr21:35,797,806-35,798,315
(GRCh37/hg19)
Size:
510 bases
Orientation:
Plus strand

Genomic View for ENSG00000272958 Gene

Genes around ENSG00000272958 on UCSC Golden Path with GeneCards custom track
ENSG00000272958 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272958 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272958 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272958 Gene

Proteins for ENSG00000272958 Gene

Post-translational modifications for ENSG00000272958 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272958 Gene

Domains & Families for ENSG00000272958 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272958 Gene

Function for ENSG00000272958 Gene

Phenotypes From GWAS Catalog for ENSG00000272958 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272958 Gene

Localization for ENSG00000272958 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272958 Gene

Pathways & Interactions for ENSG00000272958 Gene

PathCards logo

SuperPathways for ENSG00000272958 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272958 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272958 Gene

Drugs & Compounds for ENSG00000272958 Gene

No Compound Related Data Available

Transcripts for ENSG00000272958 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272958 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000353E4A_9606 lncRNA 510 2

Ensembl: ENST00000608289 (view in UCSC) ,

LNCipedia: lnc-SMIM11A-3:1,

ENSG00000272958 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272958 Gene

No ASD Table

Relevant External Links for ENSG00000272958 Gene

GeneLoc Exon Structure for
ENSG00000272958

No data available for mRNA/cDNA for ENSG00000272958 Gene

Expression for ENSG00000272958 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272958 Gene

Orthologs for ENSG00000272958 Gene

Evolution for ENSG00000272958 Gene

ENSEMBL:
Gene Tree for ENSG00000272958 (if available)
TreeFam:
Gene Tree for ENSG00000272958 (if available)

No data available for Orthologs for ENSG00000272958 Gene

Paralogs for ENSG00000272958 Gene

No data available for Paralogs for ENSG00000272958 Gene

Variants for ENSG00000272958 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272958 Gene

Disorders for ENSG00000272958 Gene

No disorders were found for ENSG00000272958 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272958 Gene

Publications for ENSG00000272958 Gene

No publications were found for ENSG00000272958 Gene.

No data available for Mastermind for ENSG00000272958 Gene

Products for ENSG00000272958 Gene

Sources for ENSG00000272958 Gene