Aliases for ENSG00000272909 Gene

Subcategory (RNA class) for ENSG00000272909 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000272909 Gene

  • Novel Transcript, Antisense To MTHFD1 5
  • NONHSAG015217 92
  • HSALNG0101884 167
  • Lnc-ZBTB25-1 168
  • AL122035.2 5

External Ids for ENSG00000272909 Gene

Previous GeneCards Identifiers for ENSG00000272909 Gene

  • GC14M064910

Summaries for ENSG00000272909 Gene

GeneCards Summary for ENSG00000272909 Gene

ENSG00000272909 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272909 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272909 Gene

Genomics for ENSG00000272909 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000272909 Gene

Promoters and enhancers for ENSG00000272909 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J064420 Enhancer 0.7 Ensembl ENCODE 5.6 +21.0 21041 1.6 WT1 FOS PBX2 JUND MEIS2 GATA3 POLR2A PKNOX1 EMSY STAT3 PLEKHG3 ENSG00000272909 MTHFD1 HSALNG0101882
GH14J064444 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.7 -4.3 -4277 4.6 SP1 EP300 RELA MEF2C POLR2A EZH2 BCL11A TCF12 ZNF384 GATA3 ZBTB1 PLEKHG3 ESR2 AKAP5 ZBTB25 ENSG00000272909 ENSG00000258824 MTHFD1
GH14J064437 Enhancer 0.7 Ensembl ENCODE 0.7 +3.8 3837 3.6 TCF12 JUND FOS FOSL2 NR3C1 JUN POLR2A SP1 ZBTB1 ENSG00000259116 AKAP5 ZBTB25 PPP1R36 MTHFD1 ENSG00000272909 ENSG00000258824 HSALNG0101882
GH14J064409 Enhancer 0.8 Ensembl ENCODE 0.3 +32.3 32337 2.6 ZNF217 FOXA2 ZNF384 FOS FOSL2 FOXP1 FOXA1 RXRA KDM1A HNF4A MTHFD1 ESR2 ZBTB1 ZBTB25 HSALNG0101882 ENSG00000272909
GH14J064430 Enhancer 0.6 ENCODE 0.4 +12.1 12080 0.2 ZNF217 CTCF RAD21 TRIM22 SMC3 IKZF3 IKZF1 ZNF654 ZNF2 ZNF143 ENSG00000272909 ENSG00000258824 MTHFD1 HSALNG0101882
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272909 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000272909 Gene

Genomic Locations for ENSG00000272909 Gene
chr14:64,440,369-64,442,238
(GRCh38/hg38)
Size:
1,870 bases
Orientation:
Minus strand
chr14:64,907,087-64,908,956
(GRCh37/hg19)
Size:
1,870 bases
Orientation:
Minus strand

Genomic View for ENSG00000272909 Gene

Genes around ENSG00000272909 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000272909 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272909 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272909 Gene

Proteins for ENSG00000272909 Gene

Post-translational modifications for ENSG00000272909 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272909 Gene

Domains & Families for ENSG00000272909 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272909 Gene

Function for ENSG00000272909 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272909 Gene

Localization for ENSG00000272909 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272909 Gene

Pathways & Interactions for ENSG00000272909 Gene

PathCards logo

SuperPathways for ENSG00000272909 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000272909 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272909 Gene

Drugs & Compounds for ENSG00000272909 Gene

No Compound Related Data Available

Transcripts for ENSG00000272909 Gene

mRNA/cDNA for ENSG00000272909 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272909 Gene

No ASD Table

Relevant External Links for ENSG00000272909 Gene

GeneLoc Exon Structure for
ENSG00000272909

Expression for ENSG00000272909 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272909 Gene

Orthologs for ENSG00000272909 Gene

Evolution for ENSG00000272909 Gene

ENSEMBL:
Gene Tree for ENSG00000272909 (if available)
TreeFam:
Gene Tree for ENSG00000272909 (if available)

No data available for Orthologs for ENSG00000272909 Gene

Paralogs for ENSG00000272909 Gene

No data available for Paralogs for ENSG00000272909 Gene

Variants for ENSG00000272909 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272909 Gene

Disorders for ENSG00000272909 Gene

No disorders were found for ENSG00000272909 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272909 Gene

Publications for ENSG00000272909 Gene

No publications were found for ENSG00000272909 Gene.

No data available for Mastermind for ENSG00000272909 Gene

Products for ENSG00000272909 Gene

Sources for ENSG00000272909 Gene