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Aliases for ENSG00000272880 Gene
Data sources for ENSG00000272880 Gene:
Subcategory (RNA class) for ENSG00000272880 Gene
lncRNA
Aliases for ENSG00000272880 Gene
External Ids for ENSG00000272880 Gene
- Ensembl: ENSG00000272880
Previous GeneCards Identifiers for ENSG00000272880 Gene
- GC01P181781
Summaries for ENSG00000272880 Gene
GeneCards Summary for ENSG00000272880 Gene
ENSG00000272880 is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for ENSG00000272880 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272880 Gene
Genomics for ENSG00000272880 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ENSG00000272880 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J181086 | Promoter/Enhancer | 2.3 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 15.8 | -717.9 | -717924 | 11.6 | ZSCAN16 TBP ZBTB10 SP1 MXD4 FEZF1 CEBPA FOXA1 MNT DEK | HSALNG0008848 lnc-IER5-3 piR-47362 lnc-STX6-5 LHX4 IER5 ENSG00000272880 MR1 LHX4-AS1 KIAA1614 | |
| GH01J181020 | Promoter/Enhancer | 2.2 | EPDnew Ensembl ENCODE CraniofacialAtlas | 15.8 | -788.3 | -788259 | 3.7 | TBP ZBTB10 SP1 FEZF1 MNT DEK SMAD5 ETS1 ZNF217 POLR2A | STX6 LHX4 LHX4-AS1 ENSG00000272880 CACNA1E KIAA1614 piR-57134-007 | |
| GH01J181806 | Enhancer | 0.3 | Ensembl | 0.7 | -3.6 | -3586 | 1.4 | POLR2A | lnc-RGSL1-8 ENSG00000272880 HSALNG0008878 ENSG00000287452 ZNF648 CACNA1E |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ENSG00000272880 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for ENSG00000272880 Gene
Latest Assembly
- chr1:181,810,487-181,813,269
- (GRCh38/hg38)
- Size:
- 2,783 bases
- Orientation:
- Plus strand
Previous Assembly
- chr1:181,781,840-181,782,396
- (GRCh37/hg19 by Ensembl)
- Size:
- 557 bases
- Orientation:
- Plus strand
Genomic View for ENSG00000272880 Gene
Genes around ENSG00000272880 on UCSC Golden Path with GeneCards custom track
ENSG00000272880 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1q25.3 by Ensembl
ENSG00000272880 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000272880 Gene
Proteins for ENSG00000272880 Gene
Post-translational modifications for ENSG00000272880 Gene
No Post-translational modifications
No data available for DME Specific Peptides for ENSG00000272880 Gene
Domains & Families for ENSG00000272880 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272880 Gene
Function for ENSG00000272880 Gene
Phenotypes From GWAS Catalog for ENSG00000272880 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272880 Gene
Localization for ENSG00000272880 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272880 Gene
Transcripts for ENSG00000272880 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272880 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000027B939_9606 | lncRNA | 558 | 2 |
Ensembl: ENST00000609720 (view in UCSC) , LNCipedia: lnc-CACNA1E-3:1, |
| URS0001BEEF53_9606 | lncRNA | 2653 | 1 |
LncBook: HSALNT0018369, |
| URS0001BF141E_9606 | lncRNA | 557 | 1 |
LncBook: HSALNT0018370, |
ENSG00000272880 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for ENSG00000272880 Gene
- GeneLoc Exon Structure for
- ENSG00000272880
No data available for mRNA/cDNA for ENSG00000272880 Gene
Expression for ENSG00000272880 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272880 Gene
Orthologs for ENSG00000272880 Gene
No data available for Orthologs for ENSG00000272880 Gene
Paralogs for ENSG00000272880 Gene
No data available for Paralogs for ENSG00000272880 Gene
Variants for ENSG00000272880 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272880 Gene
Disorders for ENSG00000272880 Gene
No disorders were found for ENSG00000272880 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272880 Gene
Publications for ENSG00000272880 Gene
No publications were found for ENSG00000272880 Gene.
No data available for Mastermind for ENSG00000272880 Gene
Products for ENSG00000272880 Gene
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- Custom Antibody Services
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- Browse OriGene Inhibitory RNA Products For ENSG00000272880
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for ENSG00000272880
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for ENSG00000272880
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for ENSG00000272880
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Sources for ENSG00000272880 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB