Aliases for ENSG00000272871 Gene

Data sources for ENSG00000272871 Gene:

RNA type for ENSG00000272871 Gene

lncRNA

Aliases for ENSG00000272871 Gene

External Ids for ENSG00000272871 Gene

Summaries for ENSG00000272871 Gene

GeneCards Summary for ENSG00000272871 Gene

ENSG00000272871 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272871 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272871 Gene

Genomics for ENSG00000272871 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272871 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J015551 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 9.7 -963.1 -963142 2.8 SP1 ZNF207 ZNF654 MYC ZNF600 ATF2 KLF9 POLR2A CEBPA ZNF223 CCDC171 HSALNG0070166 lnc-SNAPC3-3 ENSG00000215237 PSIP1 ENSG00000272871
GH09J014688 Enhancer 0.8 Ensembl ENCODE 22.7 -97.8 -97847 2.6 ZNF592 PRDM6 MAFK JUND STAT1 PRDM4 NKRF ZNF217 PKNOX1 KLF5 ZDHHC21 ENSG00000272871 HSALNG0070116 lnc-CER1-1 piR-39858-631 NFIB
GH09J014627 Enhancer 0.3 Ensembl 21.1 -37.5 -37536 0.8 POLR2A ENSG00000272871 CCDC171 piR-51305 MN298565 ZDHHC21 NFIB
GH09J014585 Enhancer 0.7 Ensembl 8.2 +4.3 4264 0.4 BCLAF1 SP1 BCL11A IRF4 EBF1 CBFB BHLHE40 IKZF1 BMI1 NFATC1 ENSG00000273399 lnc-SNAPC3-10 ZDHHC21 ENSG00000272871 HSALNG0070099 NFIB
GH09J014670 Enhancer 0.2 Ensembl 22.6 -81.1 -81136 2 piR-39858-631 ZDHHC21 ENSG00000272871 CER1 HSALNG0070116 NFIB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272871 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272871 Gene

Latest Assembly
chr9:14,588,796-14,590,065
(GRCh38/hg38)
Size:
1,270 bases
Orientation:
Minus strand

Previous Assembly
chr9:14,588,795-14,590,063
(GRCh37/hg19 by Ensembl)
Size:
1,269 bases
Orientation:
Minus strand

Genomic View for ENSG00000272871 Gene

Genes around ENSG00000272871 on UCSC Golden Path with GeneCards custom track
ENSG00000272871 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272871 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272871 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272871 Gene

Proteins for ENSG00000272871 Gene

Post-translational modifications for ENSG00000272871 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272871 Gene

Domains & Families for ENSG00000272871 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272871 Gene

Function for ENSG00000272871 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272871 Gene

Localization for ENSG00000272871 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272871 Gene

Pathways & Interactions for ENSG00000272871 Gene

PathCards logo

SuperPathways for ENSG00000272871 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272871 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272871 Gene

Drugs & Compounds for ENSG00000272871 Gene

No Compound Related Data Available

Transcripts for ENSG00000272871 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272871 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000213ADF_9606 lncRNA 1269 2

Ensembl: ENST00000610061 (view in UCSC) ,

LNCipedia: lnc-ZDHHC21-3:1,

URS0001BD0B89_9606 lncRNA 1269 1

LncBook: HSALNT0146902,

ENSG00000272871 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272871 Gene

No ASD Table

Relevant External Links for ENSG00000272871 Gene

GeneLoc Exon Structure for
ENSG00000272871

No data available for mRNA/cDNA for ENSG00000272871 Gene

Expression for ENSG00000272871 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272871 Gene

Orthologs for ENSG00000272871 Gene

Evolution for ENSG00000272871 Gene

ENSEMBL:
Gene Tree for ENSG00000272871 (if available)
TreeFam:
Gene Tree for ENSG00000272871 (if available)

No data available for Orthologs for ENSG00000272871 Gene

Paralogs for ENSG00000272871 Gene

No data available for Paralogs for ENSG00000272871 Gene

Variants for ENSG00000272871 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272871 Gene

Disorders for ENSG00000272871 Gene

Additional Disease Information for ENSG00000272871

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000272871 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000272871 Gene

Publications for ENSG00000272871 Gene

No publications were found for ENSG00000272871 Gene.

No data available for Mastermind for ENSG00000272871 Gene

Products for ENSG00000272871 Gene

Sources for ENSG00000272871 Gene