Aliases for ENSG00000272856 Gene

Subcategory (RNA class) for ENSG00000272856 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000272856 Gene

  • Novel Transcript 5
  • HSALNG0035707 164
  • Lnc-SPARCL1-2 165
  • AC112250.2 5

External Ids for ENSG00000272856 Gene

Summaries for ENSG00000272856 Gene

GeneCards Summary for ENSG00000272856 Gene

ENSG00000272856 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272856 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272856 Gene

Genomics for ENSG00000272856 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272856 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J087524 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.4 -59.9 -59850 7.5 PRDM10 SP1 SCRT2 ZNF10 YY1 ZBTB17 NR2F2 CBX5 RAD21 ZSCAN16 SPARCL1 lnc-HSD17B11-3 DMP1 ENSG00000272856 MEPE piR-38352-421 NUDT9
GH04J087864 Enhancer 1.3 FANTOM5 Ensembl ENCODE 5 -400.8 -400826 8.9 GATAD2A TEAD4 TFE3 SOX13 NFKBIZ RCOR2 FOXA1 RBFOX2 RXRB IRF2 SPP1 ENSG00000249001 PKD2 ENSG00000272856 piR-31470-376 piR-50968-096 MEPE
GH04J087488 Enhancer 0.8 Ensembl dbSUPER 7.2 -22.4 -22397 2.2 REST SP1 CEBPA NFE2 YY1 ZBTB33 JUND NR2F2 RAD21 CEBPB SPARCL1 ENSG00000272856 piR-38352-421 lnc-HSD17B11-3 NUDT9
GH04J087500 Enhancer 0.6 Ensembl dbSUPER 7.6 -32.4 -32397 0.2 NR2F1 NFATC1 ZNF217 IKZF2 ENSG00000272856 piR-38352-421 lnc-HSD17B11-3 SPARCL1 NUDT9
GH04J087497 Enhancer 0.6 ENCODE dbSUPER 7.9 -30.6 -30640 2.1 CTCF FOXA2 BATF SPARCL1 ENSG00000272856 piR-38352-421 lnc-HSD17B11-3 NUDT9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272856 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272856 Gene

Genomic Locations for ENSG00000272856 Gene
chr4:87,460,724-87,467,904
(GRCh38/hg38)
Size:
7,181 bases
Orientation:
Minus strand
chr4:88,381,959-88,383,432
(GRCh37/hg19)
Size:
1,474 bases
Orientation:
Minus strand

Genomic View for ENSG00000272856 Gene

Genes around ENSG00000272856 on UCSC Golden Path with GeneCards custom track
ENSG00000272856 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272856 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272856 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272856 Gene

Proteins for ENSG00000272856 Gene

Post-translational modifications for ENSG00000272856 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272856 Gene

Domains & Families for ENSG00000272856 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272856 Gene

Function for ENSG00000272856 Gene

Phenotypes From GWAS Catalog for ENSG00000272856 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272856 Gene

Localization for ENSG00000272856 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272856 Gene

Pathways & Interactions for ENSG00000272856 Gene

PathCards logo

SuperPathways for ENSG00000272856 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272856 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272856 Gene

Drugs & Compounds for ENSG00000272856 Gene

No Compound Related Data Available

Transcripts for ENSG00000272856 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272856 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001E2FDD_9606 lncRNA 491 3

Ensembl: ENST00000609450 (view in UCSC) ,

LncBook: HSALNT0074716,

LNCipedia: lnc-SPARCL1-2:1,

URS0000E9AAEF_9606 lncRNA 2722 1

LncBook: HSALNT0074715,

ENSG00000272856 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272856 Gene

No ASD Table

Relevant External Links for ENSG00000272856 Gene

GeneLoc Exon Structure for
ENSG00000272856

No data available for mRNA/cDNA for ENSG00000272856 Gene

Expression for ENSG00000272856 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272856 Gene

Orthologs for ENSG00000272856 Gene

Evolution for ENSG00000272856 Gene

ENSEMBL:
Gene Tree for ENSG00000272856 (if available)
TreeFam:
Gene Tree for ENSG00000272856 (if available)

No data available for Orthologs for ENSG00000272856 Gene

Paralogs for ENSG00000272856 Gene

No data available for Paralogs for ENSG00000272856 Gene

Variants for ENSG00000272856 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272856 Gene

Disorders for ENSG00000272856 Gene

No disorders were found for ENSG00000272856 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272856 Gene

Publications for ENSG00000272856 Gene

No publications were found for ENSG00000272856 Gene.

No data available for Mastermind for ENSG00000272856 Gene

Products for ENSG00000272856 Gene

Sources for ENSG00000272856 Gene