ENSG00000272853 Gene (RNA Gene)

 

GC10M014877
GIFtS:
4

Aliases for ENSG00000272853 Gene

Subcategory (RNA class) for ENSG00000272853 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000272853 Gene

  • Novel Transcript 5
  • NONHSAG005291 94
  • HSALNG0076333 169
  • Lnc-DCLRE1C-1 170
  • AC069544.1 5

External Ids for ENSG00000272853 Gene

Previous GeneCards Identifiers for ENSG00000272853 Gene

  • GC10M014919

Summaries for ENSG00000272853 Gene

GeneCards Summary for ENSG00000272853 Gene

ENSG00000272853 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272853 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272853 Gene

Genomics for ENSG00000272853 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000272853 Gene

Promoters and enhancers for ENSG00000272853 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J014875 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +0.4 368 5.4 SP1 ZBTB40 RBPJ SMARCE1 POLR2A TCF7L2 USF2 CREB1 HCFC1 ZNF362 SUV39H2 CDNF ENSG00000272853 HSPA14 DCLRE1C ACBD7 GAPDHP45 ENSG00000236495 MINDY3 RPP38-DT
GH10J014950 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 14.6 -74.3 -74253 4.9 SIN3A SP1 ZBTB40 CTCF RBPJ SMARCE1 POLR2A ATF1 FOS CREB1 DCLRE1C MEIG1 ACBD7 ENSG00000272853 OR7E26P RPP38-DT lnc-CDNF-3
GH10J015452 Enhancer 1.3 Ensembl ENCODE dbSUPER 14.5 -573.2 -573165 1.1 ZBTB40 SMARCE1 CC2D1A L3MBTL2 DACH1 TEAD4 ZKSCAN8 ZNF148 GTF2F1 CBFA2T2 HSPA14 RPP38 DCLRE1C SUV39H2 ENSG00000272853 MINDY3 RPP38-DT L13714-027 HSALNG0076363
GH10J014872 Enhancer 0.7 Ensembl ENCODE 0.4 +5.4 5385 1.8 DPF2 RUNX3 JUNB BATF IRF4 ATF7 CDNF HSPA14 ENSG00000272853 lnc-CDNF-1
GH10J014860 Enhancer 0.7 Ensembl ENCODE 0.4 +18.6 18552 3.5 HLF PRDM1 SCRT2 SCRT1 CEBPG ATF2 HSPA14 ENSG00000272853 lnc-CDNF-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272853 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000272853 Gene

Genomic Locations for ENSG00000272853 Gene
chr10:14,877,688-14,878,686
(GRCh38/hg38)
Size:
999 bases
Orientation:
Minus strand
chr10:14,919,687-14,920,685
(GRCh37/hg19)
Size:
999 bases
Orientation:
Minus strand

Genomic View for ENSG00000272853 Gene

Genes around ENSG00000272853 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000272853 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272853 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000272853 Gene

Proteins for ENSG00000272853 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000272853 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272853 Gene

Domains & Families for ENSG00000272853 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272853 Gene

Function for ENSG00000272853 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272853 Gene

Localization for ENSG00000272853 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272853 Gene

Pathways & Interactions for ENSG00000272853 Gene

PathCards logo

SuperPathways for ENSG00000272853 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272853 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000272853 Gene

Drugs & Compounds for ENSG00000272853 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000272853 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000272853 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :
(7) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272853 Gene

No ASD Table

Relevant External Links for ENSG00000272853 Gene

GeneLoc Exon Structure for
ENSG00000272853

Expression for ENSG00000272853 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272853 Gene

Orthologs for ENSG00000272853 Gene

Evolution for ENSG00000272853 Gene

ENSEMBL:
Gene Tree for ENSG00000272853 (if available)
TreeFam:
Gene Tree for ENSG00000272853 (if available)

No data available for Orthologs for ENSG00000272853 Gene

Paralogs for ENSG00000272853 Gene

No data available for Paralogs for ENSG00000272853 Gene

Variants for ENSG00000272853 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272853 Gene

Disorders for ENSG00000272853 Gene

No disorders were found for ENSG00000272853 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272853 Gene

Publications for ENSG00000272853 Gene

No publications were found for ENSG00000272853 Gene.

No data available for External Links for ENSG00000272853 Gene

Products for ENSG00000272853 Gene

Sources for ENSG00000272853 Gene