Aliases for ENSG00000272716 Gene

Subcategory (RNA class) for ENSG00000272716 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000272716 Gene

  • Novel Transcript 5
  • NONHSAG027416 92
  • HSALNG0014059 167
  • Lnc-NLRC4-3 168
  • AL121658.1 5

External Ids for ENSG00000272716 Gene

Previous GeneCards Identifiers for ENSG00000272716 Gene

  • GC02M032390

Summaries for ENSG00000272716 Gene

GeneCards Summary for ENSG00000272716 Gene

ENSG00000272716 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272716 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272716 Gene

Genomics for ENSG00000272716 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000272716 Gene

Promoters and enhancers for ENSG00000272716 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J032164 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 509 -0.4 -421 4 EP300 ZBTB40 ZNF217 SIN3A TCF12 MYC NRF1 POLR2G SP1 BCLAF1 SLC30A6 ENSG00000272716 RNU6-647P NLRC4 piR-50437-368
GH02J032061 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 6.3 +101.7 101663 4.2 FOXK2 ZBTB40 ZNF217 EP300 CTCF TCF12 NRF1 POLR2G SP1 NCOR1 SPAST lnc-DPY30-6 SLC30A6 ENSG00000272716 piR-43106-117
GH02J032189 Enhancer 0.8 Ensembl 6.1 -23.8 -23844 2 SP1 EP300 JUND RELA TRIM22 BCL11A TCF12 CBFB ARNT MEF2B SLC30A6 ENSG00000272716 XDH piR-50437-368 piR-60415-007
GH02J032072 Enhancer 0.7 Ensembl ENCODE 6.3 +91.8 91752 2.4 ZNF316 MAFF MAFK BCL6 MAFG KDM1A HLF HNF4G EMSY DPY30 MEMO1 SLC30A6 ENSG00000272716 XDH piR-43106-117 SPAST
GH02J032558 Enhancer 0.7 Ensembl 4.1 -394.4 -394443 4 GTF2E2 TRIM24 FOS CEBPG POLR2H RBM22 ATF4 MEIS2 POLR2A ZNF175 TTC27 MIR558 BIRC6 DPY30 ENSG00000272716 ENSG00000279544 piR-57460-370 BIRC6-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272716 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000272716 Gene

Genomic Locations for ENSG00000272716 Gene
chr2:32,165,046-32,165,757
(GRCh38/hg38)
Size:
712 bases
Orientation:
Minus strand
chr2:32,390,115-32,390,826
(GRCh37/hg19)
Size:
712 bases
Orientation:
Minus strand

Genomic View for ENSG00000272716 Gene

Genes around ENSG00000272716 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000272716 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272716 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272716 Gene

Proteins for ENSG00000272716 Gene

Post-translational modifications for ENSG00000272716 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272716 Gene

Domains & Families for ENSG00000272716 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272716 Gene

Function for ENSG00000272716 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272716 Gene

Localization for ENSG00000272716 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272716 Gene

Pathways & Interactions for ENSG00000272716 Gene

PathCards logo

SuperPathways for ENSG00000272716 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000272716 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272716 Gene

Drugs & Compounds for ENSG00000272716 Gene

No Compound Related Data Available

Transcripts for ENSG00000272716 Gene

mRNA/cDNA for ENSG00000272716 Gene

4 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272716 Gene

No ASD Table

Relevant External Links for ENSG00000272716 Gene

GeneLoc Exon Structure for
ENSG00000272716

Expression for ENSG00000272716 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272716 Gene

Orthologs for ENSG00000272716 Gene

Evolution for ENSG00000272716 Gene

ENSEMBL:
Gene Tree for ENSG00000272716 (if available)
TreeFam:
Gene Tree for ENSG00000272716 (if available)

No data available for Orthologs for ENSG00000272716 Gene

Paralogs for ENSG00000272716 Gene

No data available for Paralogs for ENSG00000272716 Gene

Variants for ENSG00000272716 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272716 Gene

Disorders for ENSG00000272716 Gene

No disorders were found for ENSG00000272716 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272716 Gene

Publications for ENSG00000272716 Gene

No publications were found for ENSG00000272716 Gene.

No data available for Mastermind for ENSG00000272716 Gene

Products for ENSG00000272716 Gene

Sources for ENSG00000272716 Gene