Aliases for ENSG00000272622 Gene

Data sources for ENSG00000272622 Gene:

Subcategory (RNA class) for ENSG00000272622 Gene

lncRNA

Aliases for ENSG00000272622 Gene

External Ids for ENSG00000272622 Gene

Previous GeneCards Identifiers for ENSG00000272622 Gene

  • GC02P227665

Summaries for ENSG00000272622 Gene

GeneCards Summary for ENSG00000272622 Gene

ENSG00000272622 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272622 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272622 Gene

Genomics for ENSG00000272622 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272622 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J226788 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -0.7 -709 13.8 CHD2 SP1 MXD4 CEBPA NR2C1 FOXA1 MNT BRCA1 ETS1 CTCF RHBDD1 IRS1 ENSG00000272622 HSALNG0022713 HSALNG0022714 ENSG00000261379 5MWI_A-093 HSALNG0022712
GH02J226307 Enhancer 0.6 FANTOM5 Ensembl 5.9 -488.6 -488614 2 HDAC2 SP1 CREM RCOR2 ZMYM3 IRS1 ENSG00000272622 lnc-IRS1-8 piR-36746-014 ENSG00000235070 lnc-IRS1-1 NYAP2
GH02J227789 Enhancer 0.7 Ensembl 4.5 +993.8 993786 0.4 BCL11A PRDM1 JUND IKZF1 TCF7 NR2F1 ATF2 JUNB TCF12 JUN ENSG00000272622 lnc-SLC19A3-3 lnc-CCL20-1 CCL20 SCYGR8
GH02J226802 Enhancer 1 ENCODE dbSUPER 0.4 +6.5 6485 0.2 MXD4 CEBPA CTCF HOMEZ THAP11 CEBPB REST CUX1 FOXA2 ZNF511 ENSG00000261379 RHBDD1 ENSG00000272622 COL4A4
GH02J226813 Enhancer 0.5 Ensembl 0.4 +17.2 17186 0.8 CTCF REST TRIM22 SMC3 RAD21 MIER2 ARID2 RUNX3 lnc-RHBDD1-6 ENSG00000212391 HSALNG0022716 RHBDD1 ENSG00000272622 COL4A4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272622 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272622 Gene

Latest Assembly
chr2:226,796,215-226,819,886
(GRCh38/hg38)
Size:
23,672 bases
Orientation:
Plus strand

Previous Assembly
chr2:227,664,862-227,675,745
(GRCh37/hg19 by Ensembl)
Size:
10,884 bases
Orientation:
Plus strand

Genomic View for ENSG00000272622 Gene

Genes around ENSG00000272622 on UCSC Golden Path with GeneCards custom track
ENSG00000272622 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272622 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272622 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272622 Gene

Proteins for ENSG00000272622 Gene

Post-translational modifications for ENSG00000272622 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272622 Gene

Domains & Families for ENSG00000272622 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272622 Gene

Function for ENSG00000272622 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272622 Gene

Localization for ENSG00000272622 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272622 Gene

Pathways & Interactions for ENSG00000272622 Gene

PathCards logo

SuperPathways for ENSG00000272622 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272622 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272622 Gene

Drugs & Compounds for ENSG00000272622 Gene

No Compound Related Data Available

Transcripts for ENSG00000272622 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272622 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF3AB4_9606 lncRNA 3296 1

Ensembl: ENST00000668519 (view in UCSC) ,

URS0000EED344_9606 lncRNA 1804 1

Ensembl: ENST00000607970 (view in UCSC) ,

URS0000D5E167_9606 lncRNA 7399 2

LncBook: HSALNT0048167,

LNCipedia: lnc-RHBDD1-6:1,

URS0000D59A2C_9606 lncRNA 5933 2

LncBook: HSALNT0048168,

LNCipedia: lnc-RHBDD1-6:2,

URS0000D5CFCE_9606 lncRNA 819 2

LncBook: HSALNT0048169,

LNCipedia: lnc-RHBDD1-6:3,

ENSG00000272622 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272622 Gene

No ASD Table

Relevant External Links for ENSG00000272622 Gene

GeneLoc Exon Structure for
ENSG00000272622

No data available for mRNA/cDNA for ENSG00000272622 Gene

Expression for ENSG00000272622 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272622 Gene

Orthologs for ENSG00000272622 Gene

Evolution for ENSG00000272622 Gene

ENSEMBL:
Gene Tree for ENSG00000272622 (if available)
TreeFam:
Gene Tree for ENSG00000272622 (if available)

No data available for Orthologs for ENSG00000272622 Gene

Paralogs for ENSG00000272622 Gene

No data available for Paralogs for ENSG00000272622 Gene

Variants for ENSG00000272622 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272622 Gene

Disorders for ENSG00000272622 Gene

No disorders were found for ENSG00000272622 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272622 Gene

Publications for ENSG00000272622 Gene

No publications were found for ENSG00000272622 Gene.

No data available for Mastermind for ENSG00000272622 Gene

Products for ENSG00000272622 Gene

Sources for ENSG00000272622 Gene