Aliases for ENSG00000272574 Gene

Subcategory (RNA class) for ENSG00000272574 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000272574 Gene

  • Novel Transcript, Sense Intronic To UAP1 5
  • HSALNG0008010 164
  • AL596325.2 5
  • Lnc-DDR2-5 165

External Ids for ENSG00000272574 Gene

Summaries for ENSG00000272574 Gene

GeneCards Summary for ENSG00000272574 Gene

ENSG00000272574 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272574 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272574 Gene

Genomics for ENSG00000272574 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272574 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J162670 Enhancer 1.2 Ensembl ENCODE dbSUPER 22.6 +79.4 79380 4.2 ZNF629 ZNF300 PRDM1 ZSCAN4 ZNF24 ZNF501 ZNF747 ZNF148 RBAK ZNF211 DUSP12 DDR2 ENSG00000272574 RF00017-376 HSALNG0008017 HSD17B7
GH01J163320 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 11.2 +729.1 729098 3.6 ZNF221 SP1 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 ZNF512 NUF2 ENSG00000232995 RGS5 ENSG00000272574 RGS4 UAP1 DDR2 RGS5-AS1 NONHSAG003309.2
GH01J162625 Enhancer 1 Ensembl ENCODE dbSUPER 11 +33.3 33281 2.5 CTCF KAT8 ZNF592 ARNT IRF2 IRF4 RCOR1 BATF ATF7 CHD2 DUSP12 ENSG00000272574 SH2D1B DDR2 lnc-UAP1-3 lnc-DDR2-3 UAP1
GH01J162343 Enhancer 0.4 Ensembl 5.2 -249.1 -249102 2 SCRT1 SPI1 MEIS2 MIR556 piR-61532-022 ENSG00000272574 ENSG00000254706 NOS1AP
GH01J162605 Enhancer 0.8 Ensembl ENCODE 0.4 +12.5 12498 2.4 JUND ZNF24 POLR2A CEBPB FOS FOSL1 NFATC3 ATF3 PRDM6 JUN lnc-SH2D1B-5 DDR2 ENSG00000272574 UAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272574 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272574 Gene

Genomic Locations for ENSG00000272574 Gene
chr1:162,593,103-162,593,754
(GRCh38/hg38)
Size:
652 bases
Orientation:
Plus strand
chr1:162,562,893-162,563,544
(GRCh37/hg19)
Size:
652 bases
Orientation:
Plus strand

Genomic View for ENSG00000272574 Gene

Genes around ENSG00000272574 on UCSC Golden Path with GeneCards custom track
ENSG00000272574 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272574 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272574 Gene

Proteins for ENSG00000272574 Gene

Post-translational modifications for ENSG00000272574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272574 Gene

Domains & Families for ENSG00000272574 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272574 Gene

Function for ENSG00000272574 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272574 Gene

Localization for ENSG00000272574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272574 Gene

Pathways & Interactions for ENSG00000272574 Gene

PathCards logo

SuperPathways for ENSG00000272574 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272574 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272574 Gene

Drugs & Compounds for ENSG00000272574 Gene

No Compound Related Data Available

Transcripts for ENSG00000272574 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272574 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000059664_9606 lncRNA 505 3

Ensembl: ENST00000609669 (view in UCSC) ,

LncBook: HSALNT0016611,

LNCipedia: lnc-DDR2-5:1,

ENSG00000272574 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272574 Gene

No ASD Table

Relevant External Links for ENSG00000272574 Gene

GeneLoc Exon Structure for
ENSG00000272574

No data available for mRNA/cDNA for ENSG00000272574 Gene

Expression for ENSG00000272574 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272574 Gene

Orthologs for ENSG00000272574 Gene

Evolution for ENSG00000272574 Gene

ENSEMBL:
Gene Tree for ENSG00000272574 (if available)
TreeFam:
Gene Tree for ENSG00000272574 (if available)

No data available for Orthologs for ENSG00000272574 Gene

Paralogs for ENSG00000272574 Gene

No data available for Paralogs for ENSG00000272574 Gene

Variants for ENSG00000272574 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272574 Gene

Disorders for ENSG00000272574 Gene

Additional Disease Information for ENSG00000272574

No disorders were found for ENSG00000272574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000272574 Gene

Publications for ENSG00000272574 Gene

No publications were found for ENSG00000272574 Gene.

No data available for Mastermind for ENSG00000272574 Gene

Products for ENSG00000272574 Gene

Sources for ENSG00000272574 Gene