ENSG00000272558 Gene (RNA Gene)

 

GC06M025984
GIFtS:
5
See more...

Aliases for ENSG00000272558 Gene

Subcategory (RNA class) for ENSG00000272558 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000272558 Gene

  • Novel Transcript, Antisense To TRIM38 5
  • NONHSAG043225.2 91
  • Lnc-HIST1H1A-1 165
  • HSALNG0048718 164
  • U91328.2 5

External Ids for ENSG00000272558 Gene

Summaries for ENSG00000272558 Gene

GeneCards Summary for ENSG00000272558 Gene

ENSG00000272558 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272558 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272558 Gene

Genomics for ENSG00000272558 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data

GeneHancers around ENSG00000272558 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272558 Gene

Genomic Locations for ENSG00000272558 Gene
chr6:25,983,812-26,013,959
(GRCh38/hg38)
Size:
30,148 bases
Orientation:
Minus strand
chr6:25,984,040-25,999,395
(GRCh37/hg19)
Size:
15,356 bases
Orientation:
Minus strand

Genomic View for ENSG00000272558 Gene

Genes around ENSG00000272558 on UCSC Golden Path with GeneCards custom track
ENSG00000272558 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272558 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272558 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000272558 Gene

Proteins for ENSG00000272558 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000272558 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272558 Gene

Domains & Families for ENSG00000272558 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272558 Gene

Function for ENSG00000272558 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000272558 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272558 Gene

Localization for ENSG00000272558 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272558 Gene

Pathways & Interactions for ENSG00000272558 Gene

PathCards logo

SuperPathways for ENSG00000272558 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272558 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272558 Gene

Drugs & Compounds for ENSG00000272558 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000272558 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272558 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003D3391_9606 lncRNA 354 4

Ensembl: ENST00000608931 (view in UCSC) ,

LncBook: HSALNT0102804,

LNCipedia: lnc-HIST1H1A-1:4,

NONCODE: NONHSAT208901.1,

URS00008BDF52_9606 lncRNA 1772 3

LncBook: HSALNT0102823,

LNCipedia: lnc-HIST1H1A-1:1,

NONCODE: NONHSAT108199.2,

URS00008B8771_9606 lncRNA 990 3

LncBook: HSALNT0102831,

LNCipedia: lnc-HIST1H1A-1:2,

NONCODE: NONHSAT108203.2,

URS00008B9EBA_9606 lncRNA 622 3

LncBook: HSALNT0102828,

LNCipedia: lnc-HIST1H1A-1:3,

NONCODE: NONHSAT108200.2,

URS00009C4A7E_9606 lncRNA 885 2

LncBook: HSALNT0102830,

NONCODE: NONHSAT208902.1,

ENSG00000272558 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272558 Gene

No ASD Table

Relevant External Links for ENSG00000272558 Gene

GeneLoc Exon Structure for
ENSG00000272558

No data available for mRNA/cDNA for ENSG00000272558 Gene

Expression for ENSG00000272558 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272558 Gene

Orthologs for ENSG00000272558 Gene

Evolution for ENSG00000272558 Gene

ENSEMBL:
Gene Tree for ENSG00000272558 (if available)
TreeFam:
Gene Tree for ENSG00000272558 (if available)

No data available for Orthologs for ENSG00000272558 Gene

Paralogs for ENSG00000272558 Gene

No data available for Paralogs for ENSG00000272558 Gene

Variants for ENSG00000272558 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272558 Gene

Disorders for ENSG00000272558 Gene

No disorders were found for ENSG00000272558 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272558 Gene

Publications for ENSG00000272558 Gene

No publications were found for ENSG00000272558 Gene.

No data available for Mastermind for ENSG00000272558 Gene

Products for ENSG00000272558 Gene

Sources for ENSG00000272558 Gene