Aliases for ENSG00000272456 Gene

Subcategory (RNA class) for ENSG00000272456 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000272456 Gene

  • Novel Transcript 5
  • HSALNG0068811 167
  • Lnc-KHDRBS3-6 168
  • NONHSAG051354 92
  • AC087045.2 5

External Ids for ENSG00000272456 Gene

Previous GeneCards Identifiers for ENSG00000272456 Gene

  • GC08P135735

Summaries for ENSG00000272456 Gene

GeneCards Summary for ENSG00000272456 Gene

ENSG00000272456 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272456 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272456 Gene

Genomics for ENSG00000272456 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000272456 Gene

Promoters and enhancers for ENSG00000272456 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J134711 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 5.7 -9.8 -9759 3.6 RXRA HNRNPK ZBTB40 ZNF217 EP300 SIN3A NRF1 MYC POLR2G USF1 ZFAT MIR30B ENSG00000272456
GH08J134682 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas 5.4 -38.3 -38328 3.6 ZNF217 EP300 CTCF FOS REST TGIF2 RAD21 SKI TRIM22 TEAD1 ZFAT MIR30B ENSG00000272456 piR-61240-288
GH08J134718 Enhancer 1 ENCODE 6.2 -2.4 -2384 3.3 CTCF GTF2E2 PHB2 FOS ZBTB11 AFF1 JUND TARDBP REST MEF2C MIR30B ENSG00000272456 ZFAT
GH08J134691 Enhancer 0.9 Ensembl ENCODE 4.8 -31.0 -31046 1.8 ZNF217 CTCF REST RELA MYC RAD21 TRIM22 SMC3 KDM4B DEK ENSG00000272456 piR-61240-288 ZFAT
GH08J134726 Enhancer 0.7 Ensembl 5.4 +4.4 4354 2.6 ZNF623 ZNF341 RBM25 FOXA2 NR2F2 NFIC GATA3 ZBTB33 BCOR FOXA1 MIR30B ENSG00000272456 lnc-KHDRBS3-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272456 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000272456 Gene

Genomic Locations for ENSG00000272456 Gene
chr8:134,722,947-134,723,949
(GRCh38/hg38)
Size:
1,003 bases
Orientation:
Plus strand
chr8:135,735,190-135,736,192
(GRCh37/hg19)
Size:
1,003 bases
Orientation:
Plus strand

Genomic View for ENSG00000272456 Gene

Genes around ENSG00000272456 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000272456 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272456 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272456 Gene

Proteins for ENSG00000272456 Gene

Post-translational modifications for ENSG00000272456 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272456 Gene

Domains & Families for ENSG00000272456 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272456 Gene

Function for ENSG00000272456 Gene

Phenotypes From GWAS Catalog for ENSG00000272456 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272456 Gene

Localization for ENSG00000272456 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272456 Gene

Pathways & Interactions for ENSG00000272456 Gene

PathCards logo

SuperPathways for ENSG00000272456 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000272456 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272456 Gene

Drugs & Compounds for ENSG00000272456 Gene

No Compound Related Data Available

Transcripts for ENSG00000272456 Gene

mRNA/cDNA for ENSG00000272456 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272456 Gene

No ASD Table

Relevant External Links for ENSG00000272456 Gene

GeneLoc Exon Structure for
ENSG00000272456

Expression for ENSG00000272456 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000272456 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000272456 Gene

This gene is overexpressed in Liver (x17.7) and Testis (x4.9).
genes like me logo Genes that share expression patterns with ENSG00000272456: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272456 Gene

Orthologs for ENSG00000272456 Gene

Evolution for ENSG00000272456 Gene

ENSEMBL:
Gene Tree for ENSG00000272456 (if available)
TreeFam:
Gene Tree for ENSG00000272456 (if available)

No data available for Orthologs for ENSG00000272456 Gene

Paralogs for ENSG00000272456 Gene

No data available for Paralogs for ENSG00000272456 Gene

Variants for ENSG00000272456 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272456 Gene

Disorders for ENSG00000272456 Gene

No disorders were found for ENSG00000272456 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272456 Gene

Publications for ENSG00000272456 Gene

No publications were found for ENSG00000272456 Gene.

No data available for Mastermind for ENSG00000272456 Gene

Products for ENSG00000272456 Gene

Sources for ENSG00000272456 Gene