Aliases for ENSG00000272455 Gene

Subcategory (RNA class) for ENSG00000272455 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000272455 Gene

  • Novel Transcript 5
  • NONHSAG000104.2 91
  • Lnc-TMEM88B-6 165
  • HSALNG0000155 164
  • AL391244.2 5

External Ids for ENSG00000272455 Gene

Previous GeneCards Identifiers for ENSG00000272455 Gene

  • GC01P001345
  • GC01P001409

Summaries for ENSG00000272455 Gene

GeneCards Summary for ENSG00000272455 Gene

ENSG00000272455 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272455 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272455 Gene

Genomics for ENSG00000272455 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272455 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J001405 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 610.9 -0.3 -265 3.6 ARHGAP35 SP1 CREB1 GATAD2A PRDM10 REST ZNF629 TFE3 ZNF512 SIX5 MRPL20 ENSG00000272455 RF00017-003 RN7SL657P lnc-CCNL2-2 lnc-CCNL2-3 INTS11 ATAD3B SLC35E2A CCNL2
GH01J000997 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 30.3 -407.4 -407374 5.3 ZNF221 RNF2 CEBPG SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ENSG00000272512 ISG15 HES4 INTS11 ATAD3B ENSG00000240731 WASH7P CCNL2 ENSG00000230092 CDK11A
GH01J001343 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.1 -54.3 -54328 19.2 ARHGAP35 HNRNPL CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 LEF1 SOX13 MXRA8 DVL1 HSALNG0000137 NONHSAG000093.2 ATAD3B SLC35E2A ENSG00000227775 ANKRD65 CCNL2 ENSG00000269737
GH01J001304 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 13.9 -100.5 -100492 7.6 CEBPG HNRNPL CREB1 ZBTB33 ATF7 PRDM10 ZNF629 TFE3 LEF1 IKZF1 PUSL1 ACAP3 lnc-INTS11-1 ATAD3B INTS11 ENSG00000240731 LINC00115 SLC35E2A CCNL2 LINC01409
GH01J002225 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 +823.7 823731 10.5 CEBPG HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 REST TFE3 SOX13 SKI ENSG00000240731 SLC35E2A ENSG00000271806 ENSG00000227775 ENSG00000272455 PRKCZ-AS1 ENSG00000234396 ANKRD65 TNFRSF14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272455 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272455 Gene

Genomic Locations for ENSG00000272455 Gene
chr1:1,407,315-1,410,854
(GRCh38/hg38)
Size:
3,540 bases
Orientation:
Plus strand
chr1:1,344,476-1,345,998
(GRCh37/hg19)
Size:
1,523 bases
Orientation:
Plus strand

Genomic View for ENSG00000272455 Gene

Genes around ENSG00000272455 on UCSC Golden Path with GeneCards custom track
ENSG00000272455 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272455 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272455 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272455 Gene

Proteins for ENSG00000272455 Gene

Post-translational modifications for ENSG00000272455 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272455 Gene

Domains & Families for ENSG00000272455 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272455 Gene

Function for ENSG00000272455 Gene

Phenotypes From GWAS Catalog for ENSG00000272455 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272455 Gene

Localization for ENSG00000272455 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272455 Gene

Pathways & Interactions for ENSG00000272455 Gene

PathCards logo

SuperPathways for ENSG00000272455 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272455 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272455 Gene

Drugs & Compounds for ENSG00000272455 Gene

No Compound Related Data Available

Transcripts for ENSG00000272455 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272455 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002345F8_9606 lncRNA 1523 2

Ensembl: ENST00000607307 (view in UCSC) ,

LNCipedia: lnc-TMEM88B-6:2,

URS00008C28EE_9606 lncRNA 3106 2

LNCipedia: lnc-TMEM88B-6:1,

NONCODE: NONHSAT000313.2,

URS0000D5972C_9606 lncRNA 1411 2

LncBook: HSALNT0000422,

LNCipedia: lnc-TMEM88B-6:4,

URS0000D594EE_9606 lncRNA 3058 1

LNCipedia: lnc-TMEM88B-6:3,

ENSG00000272455 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272455 Gene

No ASD Table

Relevant External Links for ENSG00000272455 Gene

GeneLoc Exon Structure for
ENSG00000272455

No data available for mRNA/cDNA for ENSG00000272455 Gene

Expression for ENSG00000272455 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000272455 Gene

genes like me logo Genes that share expression patterns with ENSG00000272455: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272455 Gene

Orthologs for ENSG00000272455 Gene

Evolution for ENSG00000272455 Gene

ENSEMBL:
Gene Tree for ENSG00000272455 (if available)
TreeFam:
Gene Tree for ENSG00000272455 (if available)

No data available for Orthologs for ENSG00000272455 Gene

Paralogs for ENSG00000272455 Gene

No data available for Paralogs for ENSG00000272455 Gene

Variants for ENSG00000272455 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272455 Gene

Disorders for ENSG00000272455 Gene

No disorders were found for ENSG00000272455 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272455 Gene

Publications for ENSG00000272455 Gene

No publications were found for ENSG00000272455 Gene.

No data available for Mastermind for ENSG00000272455 Gene

Products for ENSG00000272455 Gene

Sources for ENSG00000272455 Gene