Aliases for ENSG00000272449 Gene

Subcategory (RNA class) for ENSG00000272449 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for ENSG00000272449 Gene

  • Novel Transcript 5
  • Lnc-TNFRSF14-66 168
  • AL139246.5 5

External Ids for ENSG00000272449 Gene

Additional External Ids for ENSG00000272449 Gene

Previous GeneCards Identifiers for ENSG00000272449 Gene

  • GC01P002477
  • GC01P002546

Summaries for ENSG00000272449 Gene

GeneCards Summary for ENSG00000272449 Gene

ENSG00000272449 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272449 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272449 Gene

Genomics for ENSG00000272449 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000272449 Gene

Promoters and enhancers for ENSG00000272449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J002531 Promoter 0.7 Ensembl 500.7 +0.9 937 0.4 MYC CTCF NFIC GATA3 EZH2 HIC1 NFIB VEZF1 MAX ZFX ENSG00000272449 HES5 MMEL1 AB372649-001
GH01J002522 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 6.1 -3.3 -3341 7.8 HNRNPK ZNF217 ZSCAN5C TCF12 NRF1 POLR2G USF1 SP1 FOS SIX5 PANK4 HES5 lnc-HES5-2 ENSG00000224387 FAAP20 MORN1 MMEL1 ENSG00000272449
GH01J002532 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 5.5 +4.4 4388 3.3 ZNF217 FOS ZIC2 ZKSCAN8 CTBP1 HCFC1 SIN3A ESRRA MBD2 FOSL2 AB372649-001 ENSG00000224387 MMEL1 ENSG00000272449 HES5
GH01J002493 Enhancer 0.8 ENCODE 5.4 -35.7 -35748 0.8 ZNF10 ZIC2 ZBTB10 ZBTB26 TRIM28 TEAD1 FOXA2 BCL11A CEBPB ZBTB17 ENSG00000224387 ENSG00000229393 ENSG00000272449 PLCH2
GH01J002543 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +17.1 17118 8.8 FOXK2 HNRNPK CTCF SIN3A NRF1 ZNF300 USF1 POLR2G SP1 PHF8 FAAP20 CDK11A SLC35E2A ENSG00000227775 MORN1 MMEL1 ENSG00000269737 TNFRSF14 RER1 SLC35E2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272449 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000272449 Gene

Genomic Locations for ENSG00000272449 Gene
chr1:2,530,064-2,547,460
(GRCh38/hg38)
Size:
17,397 bases
Orientation:
Plus strand
chr1:2,477,904-2,478,899
(GRCh37/hg19)
Size:
996 bases
Orientation:
Plus strand

Genomic View for ENSG00000272449 Gene

Genes around ENSG00000272449 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000272449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272449 Gene

Proteins for ENSG00000272449 Gene

Post-translational modifications for ENSG00000272449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272449 Gene

Domains & Families for ENSG00000272449 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272449 Gene

Function for ENSG00000272449 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272449 Gene

Localization for ENSG00000272449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272449 Gene

Pathways & Interactions for ENSG00000272449 Gene

PathCards logo

SuperPathways for ENSG00000272449 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000272449 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272449 Gene

Drugs & Compounds for ENSG00000272449 Gene

No Compound Related Data Available

Transcripts for ENSG00000272449 Gene

mRNA/cDNA for ENSG00000272449 Gene

4 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272449 Gene

No ASD Table

Relevant External Links for ENSG00000272449 Gene

GeneLoc Exon Structure for
ENSG00000272449

Expression for ENSG00000272449 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000272449 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000272449 Gene

This gene is overexpressed in Whole Blood (x5.3).
genes like me logo Genes that share expression patterns with ENSG00000272449: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272449 Gene

Orthologs for ENSG00000272449 Gene

Evolution for ENSG00000272449 Gene

ENSEMBL:
Gene Tree for ENSG00000272449 (if available)
TreeFam:
Gene Tree for ENSG00000272449 (if available)

No data available for Orthologs for ENSG00000272449 Gene

Paralogs for ENSG00000272449 Gene

No data available for Paralogs for ENSG00000272449 Gene

Variants for ENSG00000272449 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272449 Gene

Disorders for ENSG00000272449 Gene

No disorders were found for ENSG00000272449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272449 Gene

Publications for ENSG00000272449 Gene

No publications were found for ENSG00000272449 Gene.

No data available for Mastermind for ENSG00000272449 Gene

Products for ENSG00000272449 Gene

Sources for ENSG00000272449 Gene