Aliases for ENSG00000272341 Gene

Subcategory (RNA class) for ENSG00000272341 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000272341 Gene

  • Novel Transcript 5
  • NONHSAG043095 92
  • Lnc-STMND1-4 168
  • AL137003.2 5

External Ids for ENSG00000272341 Gene

Summaries for ENSG00000272341 Gene

GeneCards Summary for ENSG00000272341 Gene

ENSG00000272341 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272341 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272341 Gene

Genomics for ENSG00000272341 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000272341 Gene

Promoters and enhancers for ENSG00000272341 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J016758 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 507.7 +0.7 675 14 RXRA HNRNPK ZNF217 EP300 CTCF ZSCAN5C SIN3A NRF1 TCF12 POLR2G ATXN1 ENSG00000272341 NUP153 ENSG00000272269 MYLIP ATXN1-AS1 ENSG00000229931 lnc-DTNBP1-15 RF00994-891
GH06J016720 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 4.8 -38.8 -38832 9.6 ZSCAN5C TCF12 POLR2G NCOR1 JUND FOS ZNF639 ZNF10 ZIC2 KDM6A ATXN1 ENSG00000229931 NUP153 ENSG00000272341 RF00017-5306 lnc-DTNBP1-15 hsa-miR-5096-059
GH06J016802 Enhancer 1.1 FANTOM5 ENCODE CraniofacialAtlas 0.3 +39.8 39788 2.5 EP300 USF1 ATF2 POLR2A OSR2 SMC3 MXI1 RAD21 CEBPB CTCF RF00994-891 ENSG00000272341
GH06J016781 Enhancer 0.7 Ensembl dbSUPER 0.4 +17.4 17355 1 EP300 REST RFX1 NFIC POLR2A BMI1 MEF2D ENSG00000229931 ATXN1 ENSG00000272341 RF00994-891
GH06J016772 Enhancer 0.5 Ensembl 0.4 +9.5 9530 2.2 ZIC2 OSR2 IKZF3 POLR2A PRDM6 GATA2 ZNF596 ENSG00000272341 RF00994-891
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272341 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000272341 Gene

Genomic Locations for ENSG00000272341 Gene
chr6:16,764,346-16,766,883
(GRCh38/hg38)
Size:
2,538 bases
Orientation:
Plus strand
chr6:16,764,577-16,767,114
(GRCh37/hg19)
Size:
2,538 bases
Orientation:
Plus strand

Genomic View for ENSG00000272341 Gene

Genes around ENSG00000272341 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000272341 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272341 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272341 Gene

Proteins for ENSG00000272341 Gene

Post-translational modifications for ENSG00000272341 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272341 Gene

Domains & Families for ENSG00000272341 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272341 Gene

Function for ENSG00000272341 Gene

Phenotypes From GWAS Catalog for ENSG00000272341 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272341 Gene

Localization for ENSG00000272341 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272341 Gene

Pathways & Interactions for ENSG00000272341 Gene

PathCards logo

SuperPathways for ENSG00000272341 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000272341 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272341 Gene

Drugs & Compounds for ENSG00000272341 Gene

No Compound Related Data Available

Transcripts for ENSG00000272341 Gene

mRNA/cDNA for ENSG00000272341 Gene

13 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272341 Gene

No ASD Table

Relevant External Links for ENSG00000272341 Gene

GeneLoc Exon Structure for
ENSG00000272341

Expression for ENSG00000272341 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000272341 Gene

genes like me logo Genes that share expression patterns with ENSG00000272341: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272341 Gene

Orthologs for ENSG00000272341 Gene

Evolution for ENSG00000272341 Gene

ENSEMBL:
Gene Tree for ENSG00000272341 (if available)
TreeFam:
Gene Tree for ENSG00000272341 (if available)

No data available for Orthologs for ENSG00000272341 Gene

Paralogs for ENSG00000272341 Gene

No data available for Paralogs for ENSG00000272341 Gene

Variants for ENSG00000272341 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272341 Gene

Disorders for ENSG00000272341 Gene

No disorders were found for ENSG00000272341 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272341 Gene

Publications for ENSG00000272341 Gene

No publications were found for ENSG00000272341 Gene.

No data available for Mastermind for ENSG00000272341 Gene

Products for ENSG00000272341 Gene

Sources for ENSG00000272341 Gene