Aliases for ENSG00000272163 Gene

Subcategory (RNA class) for ENSG00000272163 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000272163 Gene

  • Novel Transcript, Antisense To NEFM 5
  • HSALNG0064035 164
  • AF106564.1 5
  • Lnc-NEFL-6 165

External Ids for ENSG00000272163 Gene

Previous GeneCards Identifiers for ENSG00000272163 Gene

  • GC08M024912

Summaries for ENSG00000272163 Gene

GeneCards Summary for ENSG00000272163 Gene

ENSG00000272163 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272163 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272163 Gene

Genomics for ENSG00000272163 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272163 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J024941 Promoter/Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas 600.7 -0.1 -78 1.2 POLR2A SP2 YY1 WT1 ZFHX2 ZNF335 ZNF513 ZNF366 GLIS1 ZNF398 ENSG00000272163 NEFM ENSG00000253535 NEFL piR-60048
GH08J024943 Enhancer 0.4 ENCODE 600.7 -1.3 -1288 0.2 POLR2A TCF7L2 TBP ENSG00000272163 NEFM ENSG00000253535 piR-60048 NEFL
GH08J024912 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +27.6 27554 3.6 CTCF REST POLR2A EZH2 ZNF600 ZNF341 ZNF561 RAD21 USF1 ZBTB26 NEFM piR-57133-573 ENSG00000272163 NEFL
GH08J024891 Enhancer 0.6 Ensembl 0.2 +50.2 50154 0.8 CTCF TEAD4 REST RAD21 TRIM22 SMC3 TEAD1 RCOR1 ZNF654 ZNF660 NEFM ENSG00000253535 LOC105379329 ENSG00000272163 ADAM7
GH08J024913 Promoter 0.3 Ensembl 0.3 +29.7 29654 0.2 ENSG00000253535 NEFM ENSG00000272163 ADAM7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272163 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272163 Gene

Genomic Locations for ENSG00000272163 Gene
chr8:24,721,911-24,941,955
(GRCh38/hg38)
Size:
220,045 bases
Orientation:
Minus strand
chr8:24,769,678-24,772,230
(GRCh37/hg19)
Size:
2,553 bases
Orientation:
Minus strand

Genomic View for ENSG00000272163 Gene

Genes around ENSG00000272163 on UCSC Golden Path with GeneCards custom track
ENSG00000272163 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272163 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272163 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272163 Gene

Proteins for ENSG00000272163 Gene

Post-translational modifications for ENSG00000272163 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272163 Gene

Domains & Families for ENSG00000272163 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272163 Gene

Function for ENSG00000272163 Gene

Phenotypes From GWAS Catalog for ENSG00000272163 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272163 Gene

Localization for ENSG00000272163 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272163 Gene

Pathways & Interactions for ENSG00000272163 Gene

PathCards logo

SuperPathways for ENSG00000272163 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272163 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272163 Gene

Drugs & Compounds for ENSG00000272163 Gene

No Compound Related Data Available

Transcripts for ENSG00000272163 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272163 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007755BA_9606 lncRNA 2553 2

Ensembl: ENST00000607058 (view in UCSC) ,

LNCipedia: lnc-NEFL-6:9,

URS0000D5D5BA_9606 lncRNA 1656 2

LncBook: HSALNT0134297,

LNCipedia: lnc-NEFL-6:10,

URS0000D5A15D_9606 lncRNA 714 2

LncBook: HSALNT0134314,

LNCipedia: lnc-NEFL-6:1,

URS0000D5868A_9606 lncRNA 5985 1

LNCipedia: lnc-NEFL-6:7,

URS0000D5CBA2_9606 lncRNA 5598 1

LNCipedia: lnc-NEFL-6:11,

ENSG00000272163 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272163 Gene

No ASD Table

Relevant External Links for ENSG00000272163 Gene

GeneLoc Exon Structure for
ENSG00000272163

No data available for mRNA/cDNA for ENSG00000272163 Gene

Expression for ENSG00000272163 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000272163 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000272163 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.6), Brain - Anterior cingulate cortex (BA24) (x6.4), and Brain - Cortex (x5.6).
genes like me logo Genes that share expression patterns with ENSG00000272163: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272163 Gene

Orthologs for ENSG00000272163 Gene

Evolution for ENSG00000272163 Gene

ENSEMBL:
Gene Tree for ENSG00000272163 (if available)
TreeFam:
Gene Tree for ENSG00000272163 (if available)

No data available for Orthologs for ENSG00000272163 Gene

Paralogs for ENSG00000272163 Gene

No data available for Paralogs for ENSG00000272163 Gene

Variants for ENSG00000272163 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272163 Gene

Disorders for ENSG00000272163 Gene

Additional Disease Information for ENSG00000272163

No disorders were found for ENSG00000272163 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000272163 Gene

Publications for ENSG00000272163 Gene

No publications were found for ENSG00000272163 Gene.

No data available for Mastermind for ENSG00000272163 Gene

Products for ENSG00000272163 Gene

Sources for ENSG00000272163 Gene