Aliases for ENSG00000272161 Gene

Subcategory (RNA class) for ENSG00000272161 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000272161 Gene

  • Novel Transcript, Sense Intronic To MORN1 5
  • Lnc-PEX10-7 165
  • AL589739.1 5

External Ids for ENSG00000272161 Gene

Previous GeneCards Identifiers for ENSG00000272161 Gene

  • GC01M002257

Summaries for ENSG00000272161 Gene

GeneCards Summary for ENSG00000272161 Gene

ENSG00000272161 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272161 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272161 Gene

Genomics for ENSG00000272161 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272161 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J002326 Promoter/Enhancer 0.8 Ensembl dbSUPER 600.7 -0.2 -207 0.2 RNF2 HNRNPL RCOR1 ZBTB5 CTCF MCM5 ENSG00000272161 CDK11A ENSG00000269737 RER1 ENSG00000269896 piR-32067 MORN1 SKI
GH01J002328 Enhancer 0.3 CraniofacialAtlas dbSUPER 600.7 -2.0 -1969 0.2 ENSG00000272161 ENSG00000269896 piR-32067 MORN1 SKI
GH01J002329 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.9 -3879 3.1 ZNF600 NRF1 SOX13 MBD1 TEAD1 TFDP1 BHLHE40 DNMT3B SMAD4 BCL6 ENSG00000269896 ENSG00000272161 piR-32067 MORN1 SKI
GH01J002334 Enhancer 0.7 Ensembl CraniofacialAtlas dbSUPER 0.4 -8.9 -8908 2.4 ZFHX2 FOS EGR2 ENSG00000269896 ANKRD65 CDK11A ENSG00000272161 piR-32067 MORN1 SKI
GH01J002345 Enhancer 0.7 Ensembl dbSUPER 0.4 -19.1 -19108 1.2 MNT TAL1 CREM TCF12 CBFA2T2 CBFA2T3 ATF1 ENSG00000272420 MORN1 RER1 SKI ENSG00000269896 PLCH2 piR-32067 ENSG00000272161
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272161 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272161 Gene

Genomic Locations for ENSG00000272161 Gene
chr1:2,326,201-2,326,693
(GRCh38/hg38)
Size:
493 bases
Orientation:
Minus strand
chr1:2,257,640-2,258,132
(GRCh37/hg19)
Size:
493 bases
Orientation:
Minus strand

Genomic View for ENSG00000272161 Gene

Genes around ENSG00000272161 on UCSC Golden Path with GeneCards custom track
ENSG00000272161 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272161 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272161 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272161 Gene

Proteins for ENSG00000272161 Gene

Post-translational modifications for ENSG00000272161 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272161 Gene

Domains & Families for ENSG00000272161 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272161 Gene

Function for ENSG00000272161 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272161 Gene

Localization for ENSG00000272161 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272161 Gene

Pathways & Interactions for ENSG00000272161 Gene

PathCards logo

SuperPathways for ENSG00000272161 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272161 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272161 Gene

Drugs & Compounds for ENSG00000272161 Gene

No Compound Related Data Available

Transcripts for ENSG00000272161 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272161 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000366DDD_9606 lncRNA 493 2

Ensembl: ENST00000607720 (view in UCSC) ,

LNCipedia: lnc-PEX10-7:1,

ENSG00000272161 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272161 Gene

No ASD Table

Relevant External Links for ENSG00000272161 Gene

GeneLoc Exon Structure for
ENSG00000272161

No data available for mRNA/cDNA for ENSG00000272161 Gene

Expression for ENSG00000272161 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000272161 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000272161 Gene

This gene is overexpressed in Brain - Cerebellum (x11.8) and Brain - Cerebellar Hemisphere (x9.8).
genes like me logo Genes that share expression patterns with ENSG00000272161: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272161 Gene

Orthologs for ENSG00000272161 Gene

Evolution for ENSG00000272161 Gene

ENSEMBL:
Gene Tree for ENSG00000272161 (if available)
TreeFam:
Gene Tree for ENSG00000272161 (if available)

No data available for Orthologs for ENSG00000272161 Gene

Paralogs for ENSG00000272161 Gene

No data available for Paralogs for ENSG00000272161 Gene

Variants for ENSG00000272161 Gene

Variation tolerance for ENSG00000272161 Gene

Gene Damage Index Score: 12.25; 94.04% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000272161 Gene

Disorders for ENSG00000272161 Gene

No disorders were found for ENSG00000272161 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272161 Gene

Publications for ENSG00000272161 Gene

No publications were found for ENSG00000272161 Gene.

No data available for Mastermind for ENSG00000272161 Gene

Products for ENSG00000272161 Gene

Sources for ENSG00000272161 Gene