Aliases for ENSG00000272106 Gene

Subcategory (RNA class) for ENSG00000272106 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000272106 Gene

  • NONHSAG000117 94
  • HSALNG0000180 169
  • Lnc-FNDC10-1 170
  • AL691432.2 5
  • Artifact 5

External Ids for ENSG00000272106 Gene

Previous GeneCards Identifiers for ENSG00000272106 Gene

  • GC01M001549

Summaries for ENSG00000272106 Gene

GeneCards Summary for ENSG00000272106 Gene

ENSG00000272106 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000272106 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for ENSG00000272106 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000272106 Gene

Genomics for ENSG00000272106 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000272106 Gene

Promoters and enhancers for ENSG00000272106 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J001613 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 763.4 +0.4 405 4 ZNF785 SP1 ZBTB40 SIX5 RBPJ POLR2A USF2 CREB1 HCFC1 RUNX1 ENSG00000272106 MIB2 NONHSAG000118.2 INTS11 ATAD3B SLC35E2A SLC35E2B ENSG00000240731 FAM87B ENSG00000260179
GH01J001373 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 21 +240.7 240672 3.9 GTF3C2 ZNF785 SIN3A ZNF24 SP1 ZBTB40 CTCF SIX5 ZBTB6 MLX AURKAIP1 lnc-CCNL2-4 lnc-TAS1R3-3 ENSG00000230092 CDK11A ENSG00000269737 ATAD3B CCNL2 SDF4 ENSG00000237094
GH01J002225 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.4 -615.3 -615251 10.5 ZBTB40 ZBTB6 FOXA1 MLX RBPJ POLR2A NR2F6 CREB1 ZNF362 MYC SKI GABRD ENSG00000272420 ENSG00000272106 ENSG00000240731 SLC35E2A ENSG00000271806 ENSG00000227775 FNDC10 TMEM240
GH01J001775 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.4 -163.7 -163731 8.6 ZNF785 ZNF24 ZBTB40 SP1 CTCF FOXA1 SMARCE1 RBPJ POLR2A USF2 NADK lnc-NADK-1 CCNL2 ENSG00000269737 ATAD3B CDK11A INTS11 SDF4 ENSG00000230092 ENSG00000240731
GH01J002522 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.4 -910.9 -910928 7.8 ZNF785 SP1 SIX5 POLR2A HCFC1 MYC RELA L3MBTL2 MAX ZNF121 PANK4 HES5 lnc-HES5-2 CDK11A RER1 ENSG00000269737 GABRD ENSG00000224387 CDK11B ENSG00000272420
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272106 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000272106 Gene

Genomic Locations for ENSG00000272106 Gene
chr1:1,613,758-1,615,795
(GRCh38/hg38)
Size:
2,038 bases
Orientation:
Minus strand
chr1:1,549,138-1,551,175
(GRCh37/hg19)
Size:
2,038 bases
Orientation:
Minus strand

Genomic View for ENSG00000272106 Gene

Genes around ENSG00000272106 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000272106 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272106 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272106 Gene

Proteins for ENSG00000272106 Gene

Post-translational modifications for ENSG00000272106 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272106 Gene

Domains & Families for ENSG00000272106 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272106 Gene

Function for ENSG00000272106 Gene

Phenotypes From GWAS Catalog for ENSG00000272106 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272106 Gene

Localization for ENSG00000272106 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272106 Gene

Pathways & Interactions for ENSG00000272106 Gene

PathCards logo

SuperPathways for ENSG00000272106 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272106 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000272106 Gene

Drugs & Compounds for ENSG00000272106 Gene

No Compound Related Data Available

Transcripts for ENSG00000272106 Gene

mRNA/cDNA for ENSG00000272106 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(1) LncBook transcripts :
(6) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272106 Gene

No ASD Table

Relevant External Links for ENSG00000272106 Gene

GeneLoc Exon Structure for
ENSG00000272106

Expression for ENSG00000272106 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000272106 Gene

genes like me logo Genes that share expression patterns with ENSG00000272106: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272106 Gene

Orthologs for ENSG00000272106 Gene

Evolution for ENSG00000272106 Gene

ENSEMBL:
Gene Tree for ENSG00000272106 (if available)
TreeFam:
Gene Tree for ENSG00000272106 (if available)

No data available for Orthologs for ENSG00000272106 Gene

Paralogs for ENSG00000272106 Gene

No data available for Paralogs for ENSG00000272106 Gene

Variants for ENSG00000272106 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272106 Gene

Disorders for ENSG00000272106 Gene

No disorders were found for ENSG00000272106 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272106 Gene

Publications for ENSG00000272106 Gene

No publications were found for ENSG00000272106 Gene.

No data available for External Links for ENSG00000272106 Gene

Products for ENSG00000272106 Gene

Sources for ENSG00000272106 Gene