Aliases for ENSG00000272088 Gene

Subcategory (RNA class) for ENSG00000272088 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for ENSG00000272088 Gene

  • Novel Transcript 5
  • Lnc-ARHGEF16-2 168
  • AL512413.1 5

External Ids for ENSG00000272088 Gene

Previous GeneCards Identifiers for ENSG00000272088 Gene

  • GC01P003403

Summaries for ENSG00000272088 Gene

GeneCards Summary for ENSG00000272088 Gene

ENSG00000272088 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272088 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272088 Gene

Genomics for ENSG00000272088 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000272088 Gene

Promoters and enhancers for ENSG00000272088 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J004137 Enhancer 0.2 CraniofacialAtlas 5.9 +650.5 650495 0.4 ENSG00000272088 lnc-DFFB-4 piR-41170
GH01J003483 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -3.2 -3212 0.5 CTCF TEAD4 REST KLF7 ZBTB26 SMC3 POLR2A RAD21 GABPB1 KLF8 ARHGEF16 MEGF6 ENSG00000238260 TPRG1L TP73 WRAP73 ENSG00000272088 NONHSAG000188.2
GH01J003490 Enhancer 0.9 ENCODE dbSUPER 0.7 +4.2 4206 0.2 CTCF NRF1 ZBTB10 GABPA TARDBP REST MYC RAD21 TRIM22 SMC3 ARHGEF16 ENSG00000272088 lnc-WRAP73-4 MEGF6
GH01J003479 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -5.8 -5841 4.4 ZNF217 CTCF POLR2G NCOR1 ZIC2 SKI CTBP1 POLR2A PCBP1 ESRRA NONHSAG000188.2 ARHGEF16 MEGF6 ENSG00000238260 TPRG1L TP73 WRAP73 ENSG00000272088
GH01J003494 Enhancer 0.8 Ensembl ENCODE 0.4 +8.6 8552 2.4 FOS ZIC2 CTCF ZFHX2 MYC PKNOX1 MAZ HIC1 TBP GLIS1 lnc-WRAP73-4 ARHGEF16 ENSG00000272088 MEGF6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272088 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000272088 Gene

Genomic Locations for ENSG00000272088 Gene
chr1:3,487,246-3,487,627
(GRCh38/hg38)
Size:
382 bases
Orientation:
Plus strand
chr1:3,403,810-3,404,191
(GRCh37/hg19)
Size:
382 bases
Orientation:
Plus strand

Genomic View for ENSG00000272088 Gene

Genes around ENSG00000272088 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000272088 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272088 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272088 Gene

Proteins for ENSG00000272088 Gene

Post-translational modifications for ENSG00000272088 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272088 Gene

Domains & Families for ENSG00000272088 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272088 Gene

Function for ENSG00000272088 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272088 Gene

Localization for ENSG00000272088 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272088 Gene

Pathways & Interactions for ENSG00000272088 Gene

PathCards logo

SuperPathways for ENSG00000272088 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000272088 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272088 Gene

Drugs & Compounds for ENSG00000272088 Gene

No Compound Related Data Available

Transcripts for ENSG00000272088 Gene

mRNA/cDNA for ENSG00000272088 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272088 Gene

No ASD Table

Relevant External Links for ENSG00000272088 Gene

GeneLoc Exon Structure for
ENSG00000272088

Expression for ENSG00000272088 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000272088 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000272088 Gene

This gene is overexpressed in Colon - Transverse (x4.8).
genes like me logo Genes that share expression patterns with ENSG00000272088: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272088 Gene

Orthologs for ENSG00000272088 Gene

Evolution for ENSG00000272088 Gene

ENSEMBL:
Gene Tree for ENSG00000272088 (if available)
TreeFam:
Gene Tree for ENSG00000272088 (if available)

No data available for Orthologs for ENSG00000272088 Gene

Paralogs for ENSG00000272088 Gene

No data available for Paralogs for ENSG00000272088 Gene

Variants for ENSG00000272088 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272088 Gene

Disorders for ENSG00000272088 Gene

No disorders were found for ENSG00000272088 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272088 Gene

Publications for ENSG00000272088 Gene

No publications were found for ENSG00000272088 Gene.

No data available for Mastermind for ENSG00000272088 Gene

Products for ENSG00000272088 Gene

Sources for ENSG00000272088 Gene