Aliases for ENSG00000272084 Gene

Subcategory (RNA class) for ENSG00000272084 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000272084 Gene

  • Novel Transcript 5
  • NONHSAG000532.2 91
  • AL137127.1 5
  • Lnc-UBR4-1 165

External Ids for ENSG00000272084 Gene

Previous GeneCards Identifiers for ENSG00000272084 Gene

  • GC01M019398

Summaries for ENSG00000272084 Gene

GeneCards Summary for ENSG00000272084 Gene

ENSG00000272084 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000272084 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000272084 Gene

Genomics for ENSG00000272084 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000272084 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J019076 Enhancer 0.3 dbSUPER 600.7 -1.4 -1437 0.5 SCRT2 SCRT1 ENSG00000272084 lnc-MRTO4-3 IFFO2 UBR4
GH01J019310 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 9.9 -237.9 -237904 6.8 ARHGAP35 SP1 HNRNPL TEAD4 TFE3 ZNF512 LEF1 IKZF1 ZNF692 POLR2A AKR7A2 SLC66A1 OTUD3 UBR4 AKR7L EMC1 ENSG00000272084 RF00017-089 lnc-AKR7A2-1 MICOS10
GH01J019069 Enhancer 1 Ensembl ENCODE dbSUPER 11.2 +2.3 2302 6.4 ZNF692 ZIC2 RXRB SP1 ZNF600 ZNF341 SCRT2 POLR2A FOXA2 SCRT1 EMC1 ENSG00000272084 UBR4 MRTO4 lnc-UBR4-4 IFFO2
GH01J019271 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 4.5 -198.0 -198026 3.4 SP1 YY1 GABPA ZBTB33 JUND HNF4A EGR1 RXRA ZNF507 MAX AKR7L EMC1 RNU6-1099P SLC66A1 AKR7A2 OTUD3 TAS1R2 MRTO4 AKR7A3 ENSG00000272084
GH01J018416 Enhancer 0.8 Ensembl ENCODE 5.5 +656.8 656754 3.9 KDM1A GTF2E2 ZNF766 NR2C2 ZBTB11 MEF2D ZNF623 CEBPG ZNF395 ZNF584 HSALNG0001316 KLHDC7A ENSG00000272084 HSALNG0001317 IGSF21
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000272084 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000272084 Gene

Genomic Locations for ENSG00000272084 Gene
chr1:19,072,110-19,075,511
(GRCh38/hg38)
Size:
3,402 bases
Orientation:
Minus strand
chr1:19,398,604-19,402,005
(GRCh37/hg19)
Size:
3,402 bases
Orientation:
Minus strand

Genomic View for ENSG00000272084 Gene

Genes around ENSG00000272084 on UCSC Golden Path with GeneCards custom track
ENSG00000272084 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000272084 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000272084 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000272084 Gene

Proteins for ENSG00000272084 Gene

Post-translational modifications for ENSG00000272084 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000272084 Gene

Domains & Families for ENSG00000272084 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000272084 Gene

Function for ENSG00000272084 Gene

Phenotypes From GWAS Catalog for ENSG00000272084 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000272084 Gene

Localization for ENSG00000272084 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000272084 Gene

Pathways & Interactions for ENSG00000272084 Gene

PathCards logo

SuperPathways for ENSG00000272084 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000272084 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000272084 Gene

Drugs & Compounds for ENSG00000272084 Gene

No Compound Related Data Available

Transcripts for ENSG00000272084 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000272084 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000604D92_9606 lncRNA 3402 3

Ensembl: ENST00000606379 (view in UCSC) ,

LNCipedia: lnc-UBR4-1:1,

NONCODE: NONHSAT001273.2,

ENSG00000272084 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000272084 Gene

No ASD Table

Relevant External Links for ENSG00000272084 Gene

GeneLoc Exon Structure for
ENSG00000272084

No data available for mRNA/cDNA for ENSG00000272084 Gene

Expression for ENSG00000272084 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000272084 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000272084 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x4.0).
genes like me logo Genes that share expression patterns with ENSG00000272084: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000272084 Gene

Orthologs for ENSG00000272084 Gene

Evolution for ENSG00000272084 Gene

ENSEMBL:
Gene Tree for ENSG00000272084 (if available)
TreeFam:
Gene Tree for ENSG00000272084 (if available)

No data available for Orthologs for ENSG00000272084 Gene

Paralogs for ENSG00000272084 Gene

No data available for Paralogs for ENSG00000272084 Gene

Variants for ENSG00000272084 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000272084 Gene

Disorders for ENSG00000272084 Gene

No disorders were found for ENSG00000272084 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000272084 Gene

Publications for ENSG00000272084 Gene

No publications were found for ENSG00000272084 Gene.

No data available for Mastermind for ENSG00000272084 Gene

Products for ENSG00000272084 Gene

Sources for ENSG00000272084 Gene