Aliases for ENSG00000271955 Gene

Data sources for ENSG00000271955 Gene:

RNA type for ENSG00000271955 Gene

lncRNA

Aliases for ENSG00000271955 Gene

External Ids for ENSG00000271955 Gene

Previous GeneCards Identifiers for ENSG00000271955 Gene

  • GC02M059445

Summaries for ENSG00000271955 Gene

GeneCards Summary for ENSG00000271955 Gene

ENSG00000271955 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000271955 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000271955 Gene

Genomics for ENSG00000271955 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000271955 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J060091 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.8 3793 10 SSRP1 CEBPA KLF11 HOMEZ THAP11 FOXA2 SMAD4 SAP130 MIER3 RARA ENSG00000271955 piR-45012-278 BCL11A
GH02J060125 Enhancer 1.1 VISTA UCNEbase Ensembl dbSUPER 0.3 -25.8 -25801 1.6 EZH2 MK280073-353 ENSG00000271955 BCL11A
GH02J060104 Enhancer 0.5 FANTOM5 ENCODE dbSUPER 0.7 -4.6 -4617 1.5 ENSG00000271955 MK280073-353 BCL11A
GH02J060070 Enhancer 0.8 VISTA UCNEbase Ensembl 0.3 +29.1 29099 2.2 EZH2 lnc-BCL11A-10 piR-45012-278 ENSG00000285611 ENSG00000271955 BCL11A
GH02J060064 Enhancer 0.8 UCNEbase Ensembl 0.3 +35.3 35299 0.6 ZBTB21 GATA2 ZNF629 PRDM10 lnc-PAPOLG-6 ENSG00000285611 ENSG00000271955 HSALNG0015152 BCL11A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000271955 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000271955 Gene

Latest Assembly
chr2:59,208,568-60,100,200
(GRCh38/hg38)
Size:
891,633 bases
Orientation:
Minus strand

Previous Assembly
chr2:59,445,815-60,327,335
(GRCh37/hg19 by Ensembl)
Size:
881,521 bases
Orientation:
Minus strand

Genomic View for ENSG00000271955 Gene

Genes around ENSG00000271955 on UCSC Golden Path with GeneCards custom track
ENSG00000271955 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000271955 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000271955 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000271955 Gene

Proteins for ENSG00000271955 Gene

Post-translational modifications for ENSG00000271955 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000271955 Gene

Domains & Families for ENSG00000271955 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000271955 Gene

Function for ENSG00000271955 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271955 Gene

Localization for ENSG00000271955 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000271955 Gene

Pathways & Interactions for ENSG00000271955 Gene

PathCards logo

SuperPathways for ENSG00000271955 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000271955 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000271955 Gene

Drugs & Compounds for ENSG00000271955 Gene

No Compound Related Data Available

Transcripts for ENSG00000271955 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000271955 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005E51DB_9606 lncRNA 478 3

Ensembl: ENST00000606382 (view in UCSC) ,

LncBook: HSALNT0032077,

LNCipedia: lnc-BCL11A-16:1,

URS0000DBAA57_9606 lncRNA 849 1

Ensembl: ENST00000650011 (view in UCSC) ,

URS0001BE3BCF_9606 lncRNA 10346 1

LncBook: HSALNT0032073,

URS0001BF807E_9606 lncRNA 8579 1

LncBook: HSALNT0032072,

URS0001BE4B4E_9606 lncRNA 8299 1

LncBook: HSALNT0032071,

ENSG00000271955 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000271955 Gene

No ASD Table

Relevant External Links for ENSG00000271955 Gene

GeneLoc Exon Structure for
ENSG00000271955

No data available for mRNA/cDNA for ENSG00000271955 Gene

Expression for ENSG00000271955 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000271955 Gene

genes like me logo Genes that share expression patterns with ENSG00000271955: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271955 Gene

Orthologs for ENSG00000271955 Gene

Evolution for ENSG00000271955 Gene

ENSEMBL:
Gene Tree for ENSG00000271955 (if available)
TreeFam:
Gene Tree for ENSG00000271955 (if available)

No data available for Orthologs for ENSG00000271955 Gene

Paralogs for ENSG00000271955 Gene

No data available for Paralogs for ENSG00000271955 Gene

Variants for ENSG00000271955 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000271955 Gene

Disorders for ENSG00000271955 Gene

No disorders were found for ENSG00000271955 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000271955 Gene

Publications for ENSG00000271955 Gene

No publications were found for ENSG00000271955 Gene.

No data available for Mastermind for ENSG00000271955 Gene

Products for ENSG00000271955 Gene

Sources for ENSG00000271955 Gene