Aliases for ENSG00000271833 Gene

Data sources for ENSG00000271833 Gene:

Subcategory (RNA class) for ENSG00000271833 Gene

lncRNA

Aliases for ENSG00000271833 Gene

External Ids for ENSG00000271833 Gene

Previous GeneCards Identifiers for ENSG00000271833 Gene

  • GC09P130129

Summaries for ENSG00000271833 Gene

GeneCards Summary for ENSG00000271833 Gene

ENSG00000271833 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000271833 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000271833 Gene

Genomics for ENSG00000271833 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000271833 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J127392 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.7 +29.0 28965 7.1 CHD2 SP1 MXD4 CEBPA NR2C1 FOXA1 MNT BRCA1 SMAD5 ZFP64 SLC2A8 DNM1 STXBP1 ZNF79 ENSG00000207955 ENSG00000228487 GARNL3 SNORA65 CIZ1 RPL12
GH09J127360 Enhancer 0.8 Ensembl ENCODE 6.2 -5.1 -5110 2.3 ZIC2 REST VEZF1 RAD21 SMC3 CTCF SPI1 POLR2A ZNF384 GLIS1 SLC2A8 ENSG00000271833 HSALNG0074484 RF00017-7922 GARNL3
GH09J127369 Enhancer 0.6 Ensembl ENCODE 6.3 +3.3 3299 3.3 MAFF ZNF316 MAFK MAFG CREB1 EMSY SLC2A8 RPL12 ENSG00000271833 HSALNG0074489 RF00017-7922 RF00017-7923 GARNL3
GH09J128010 Enhancer 0.7 ENCODE dbSUPER 4.8 +644.7 644680 2.4 RXRA USF2 NFE2 RAD51 SP1 PPARG RFX1 USF1 NR2F2 ENSG00000227218 ENSG00000271833 RF00017-7943 lnc-SLC25A25-4 FAM102A SLC25A25 RF00017-7941 L13304-040
GH09J127384 Enhancer 0.5 ENCODE 0.4 +17.4 17448 0.2 CTBP1 DPF2 CREB1 GATAD2B ZNF444 HSALNG0074489 SLC2A8 ENSG00000271833 RF00017-7922 RF00017-7923 GARNL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000271833 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000271833 Gene

Latest Assembly
chr9:127,366,769-127,367,397
(GRCh38/hg38)
Size:
629 bases
Orientation:
Plus strand

Previous Assembly
chr9:130,129,049-130,129,676
(GRCh37/hg19 by Ensembl)
Size:
628 bases
Orientation:
Plus strand

Genomic View for ENSG00000271833 Gene

Genes around ENSG00000271833 on UCSC Golden Path with GeneCards custom track
ENSG00000271833 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000271833 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000271833 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000271833 Gene

Proteins for ENSG00000271833 Gene

Post-translational modifications for ENSG00000271833 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000271833 Gene

Domains & Families for ENSG00000271833 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000271833 Gene

Function for ENSG00000271833 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271833 Gene

Localization for ENSG00000271833 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000271833 Gene

Pathways & Interactions for ENSG00000271833 Gene

PathCards logo

SuperPathways for ENSG00000271833 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000271833 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000271833 Gene

Drugs & Compounds for ENSG00000271833 Gene

No Compound Related Data Available

Transcripts for ENSG00000271833 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000271833 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004934E4_9606 lncRNA 628 3

Ensembl: ENST00000607259 (view in UCSC) ,

LncBook: HSALNT0155520,

LNCipedia: lnc-SLC2A8-2:1,

ENSG00000271833 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000271833 Gene

No ASD Table

Relevant External Links for ENSG00000271833 Gene

GeneLoc Exon Structure for
ENSG00000271833

No data available for mRNA/cDNA for ENSG00000271833 Gene

Expression for ENSG00000271833 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000271833 Gene

genes like me logo Genes that share expression patterns with ENSG00000271833: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271833 Gene

Orthologs for ENSG00000271833 Gene

Evolution for ENSG00000271833 Gene

ENSEMBL:
Gene Tree for ENSG00000271833 (if available)
TreeFam:
Gene Tree for ENSG00000271833 (if available)

No data available for Orthologs for ENSG00000271833 Gene

Paralogs for ENSG00000271833 Gene

No data available for Paralogs for ENSG00000271833 Gene

Variants for ENSG00000271833 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000271833 Gene

Disorders for ENSG00000271833 Gene

Additional Disease Information for ENSG00000271833

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000271833 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000271833 Gene

Publications for ENSG00000271833 Gene

No publications were found for ENSG00000271833 Gene.

No data available for Mastermind for ENSG00000271833 Gene

Products for ENSG00000271833 Gene

Sources for ENSG00000271833 Gene